Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00435

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00425 and CA264_00430 are separated by 119 nucleotidesCA264_00430 and CA264_00435 are separated by 22 nucleotidesCA264_00435 and CA264_00440 are separated by 71 nucleotides CA264_00425: CA264_00425 - hypothetical protein, at 92,814 to 93,122 _00425 CA264_00430: CA264_00430 - hypothetical protein, at 93,242 to 93,706 _00430 CA264_00435: CA264_00435 - energy transducer TonB, at 93,729 to 94,136 _00435 CA264_00440: CA264_00440 - YihA family ribosome biogenesis GTP-binding protein, at 94,208 to 94,816 _00440 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1 2 3at 92.738 kb on + strandat 92.738 kb on + strandat 92.788 kb on + strandat 93.060 kb on + strand, within CA264_00425at 93.102 kb on + strandat 93.102 kb on + strandat 93.103 kb on - strandat 93.177 kb on - strandat 93.183 kb on - strandat 93.196 kb on + strandat 93.197 kb on - strandat 93.197 kb on - strandat 93.243 kb on + strandat 93.327 kb on + strand, within CA264_00430at 93.378 kb on + strand, within CA264_00430at 93.378 kb on + strand, within CA264_00430at 93.379 kb on - strand, within CA264_00430at 93.401 kb on - strand, within CA264_00430at 93.407 kb on + strand, within CA264_00430at 93.408 kb on - strand, within CA264_00430at 93.474 kb on + strand, within CA264_00430at 93.474 kb on + strand, within CA264_00430at 93.537 kb on + strand, within CA264_00430at 93.537 kb on + strand, within CA264_00430at 93.538 kb on - strand, within CA264_00430at 93.538 kb on - strand, within CA264_00430at 93.565 kb on + strand, within CA264_00430at 93.648 kb on - strand, within CA264_00430at 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.707 kb on - strandat 93.707 kb on - strandat 93.710 kb on + strandat 93.710 kb on + strandat 93.715 kb on + strandat 93.716 kb on - strandat 93.716 kb on - strandat 93.723 kb on + strandat 93.724 kb on - strandat 93.726 kb on - strandat 93.730 kb on + strandat 93.732 kb on + strandat 93.737 kb on + strandat 93.762 kb on + strandat 93.857 kb on + strand, within CA264_00435at 93.858 kb on - strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.965 kb on - strand, within CA264_00435at 94.175 kb on + strandat 94.176 kb on - strandat 94.189 kb on - strandat 94.195 kb on - strandat 94.209 kb on + strandat 94.245 kb on - strandat 94.808 kb on + strandat 94.808 kb on + strandat 94.919 kb on + strandat 94.926 kb on + strandat 94.947 kb on + strandat 94.948 kb on - strandat 94.971 kb on + strandat 94.972 kb on - strandat 94.974 kb on - strandat 94.977 kb on + strandat 94.977 kb on + strandat 94.977 kb on + strandat 94.978 kb on - strandat 94.978 kb on - strandat 95.075 kb on + strandat 95.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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92,738 + -1.1
92,738 + +2.0
92,788 + +1.2
93,060 + CA264_00425 0.80 +1.9
93,102 + +0.2
93,102 + -0.5
93,103 - +0.7
93,177 - +0.3
93,183 - -0.4
93,196 + +0.2
93,197 - +1.1
93,197 - -0.1
93,243 + -0.4
93,327 + CA264_00430 0.18 +1.6
93,378 + CA264_00430 0.29 +1.5
93,378 + CA264_00430 0.29 +0.3
93,379 - CA264_00430 0.29 +0.4
93,401 - CA264_00430 0.34 +0.5
93,407 + CA264_00430 0.35 +1.1
93,408 - CA264_00430 0.36 +1.2
93,474 + CA264_00430 0.50 +0.9
93,474 + CA264_00430 0.50 +0.8
93,537 + CA264_00430 0.63 +0.5
93,537 + CA264_00430 0.63 +1.1
93,538 - CA264_00430 0.64 +1.0
93,538 - CA264_00430 0.64 +1.5
93,565 + CA264_00430 0.69 +1.1
93,648 - CA264_00430 0.87 +1.0
93,706 + +0.5
93,706 + +0.9
93,706 + +1.1
93,706 + +0.7
93,706 + +0.7
93,707 - +0.5
93,707 - +0.4
93,710 + +1.1
93,710 + +0.8
93,715 + +0.7
93,716 - -0.2
93,716 - -0.0
93,723 + -0.7
93,724 - -0.1
93,726 - +0.9
93,730 + +0.3
93,732 + +0.7
93,737 + +0.2
93,762 + +0.3
93,857 + CA264_00435 0.31 -0.2
93,858 - CA264_00435 0.32 +0.5
93,964 + CA264_00435 0.58 +0.1
93,964 + CA264_00435 0.58 -0.6
93,964 + CA264_00435 0.58 -0.5
93,965 - CA264_00435 0.58 -1.2
94,175 + +0.9
94,176 - -0.3
94,189 - +0.7
94,195 - -0.3
94,209 + +0.9
94,245 - +1.6
94,808 + +0.3
94,808 + +0.6
94,919 + -0.2
94,926 + -0.6
94,947 + -0.6
94,948 - +3.2
94,971 + -0.3
94,972 - -1.5
94,974 - -0.8
94,977 + -0.2
94,977 + +1.2
94,977 + -0.8
94,978 - -0.6
94,978 - -2.0
95,075 + -0.2
95,076 - +0.4

Or see this region's nucleotide sequence