Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00380

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00370 and CA264_00375 are separated by 138 nucleotidesCA264_00375 and CA264_00380 are separated by 58 nucleotidesCA264_00380 and CA264_00385 are separated by 180 nucleotides CA264_00370: CA264_00370 - hypothetical protein, at 83,999 to 84,394 _00370 CA264_00375: CA264_00375 - hypothetical protein, at 84,533 to 85,006 _00375 CA264_00380: CA264_00380 - hypothetical protein, at 85,065 to 85,520 _00380 CA264_00385: CA264_00385 - hypothetical protein, at 85,701 to 86,570 _00385 Position (kb) 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 84.141 kb on + strand, within CA264_00370at 84.142 kb on - strand, within CA264_00370at 84.142 kb on - strand, within CA264_00370at 84.158 kb on - strand, within CA264_00370at 84.160 kb on - strand, within CA264_00370at 84.166 kb on + strand, within CA264_00370at 84.167 kb on - strand, within CA264_00370at 84.169 kb on - strand, within CA264_00370at 84.240 kb on - strand, within CA264_00370at 84.240 kb on - strand, within CA264_00370at 84.240 kb on - strand, within CA264_00370at 84.240 kb on - strand, within CA264_00370at 84.281 kb on + strand, within CA264_00370at 84.283 kb on + strand, within CA264_00370at 84.292 kb on + strand, within CA264_00370at 84.319 kb on - strand, within CA264_00370at 84.322 kb on - strand, within CA264_00370at 84.392 kb on + strandat 84.393 kb on - strandat 84.432 kb on + strandat 84.437 kb on + strandat 84.451 kb on + strandat 84.453 kb on + strandat 84.489 kb on + strandat 84.522 kb on + strandat 84.549 kb on + strandat 84.550 kb on - strandat 84.558 kb on + strandat 84.558 kb on + strandat 84.571 kb on + strandat 84.585 kb on + strand, within CA264_00375at 84.598 kb on + strand, within CA264_00375at 84.666 kb on + strand, within CA264_00375at 84.667 kb on - strand, within CA264_00375at 84.720 kb on + strand, within CA264_00375at 84.721 kb on - strand, within CA264_00375at 84.750 kb on + strand, within CA264_00375at 84.751 kb on - strand, within CA264_00375at 84.751 kb on - strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.752 kb on + strand, within CA264_00375at 84.753 kb on - strand, within CA264_00375at 84.753 kb on - strand, within CA264_00375at 84.773 kb on - strand, within CA264_00375at 84.778 kb on + strand, within CA264_00375at 84.784 kb on + strand, within CA264_00375at 84.785 kb on - strand, within CA264_00375at 84.806 kb on - strand, within CA264_00375at 84.856 kb on - strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.861 kb on + strand, within CA264_00375at 84.862 kb on - strand, within CA264_00375at 84.865 kb on + strand, within CA264_00375at 84.866 kb on - strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.896 kb on + strand, within CA264_00375at 84.932 kb on + strand, within CA264_00375at 84.932 kb on + strand, within CA264_00375at 84.933 kb on - strand, within CA264_00375at 84.949 kb on + strand, within CA264_00375at 84.949 kb on + strand, within CA264_00375at 84.952 kb on + strand, within CA264_00375at 85.004 kb on + strandat 85.005 kb on - strandat 85.005 kb on - strandat 85.105 kb on + strandat 85.107 kb on + strandat 85.108 kb on - strandat 85.128 kb on + strand, within CA264_00380at 85.129 kb on - strand, within CA264_00380at 85.129 kb on - strand, within CA264_00380at 85.135 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.189 kb on + strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.190 kb on - strand, within CA264_00380at 85.224 kb on + strand, within CA264_00380at 85.249 kb on - strand, within CA264_00380at 85.275 kb on + strand, within CA264_00380at 85.275 kb on + strand, within CA264_00380at 85.304 kb on + strand, within CA264_00380at 85.374 kb on + strand, within CA264_00380at 85.375 kb on - strand, within CA264_00380at 85.394 kb on + strand, within CA264_00380at 85.428 kb on + strand, within CA264_00380at 85.433 kb on - strand, within CA264_00380at 85.453 kb on + strand, within CA264_00380at 85.460 kb on + strand, within CA264_00380at 85.576 kb on - strandat 85.678 kb on + strandat 85.741 kb on + strandat 85.742 kb on - strandat 85.742 kb on - strandat 85.765 kb on - strandat 85.766 kb on + strandat 85.766 kb on + strandat 85.767 kb on - strandat 85.782 kb on + strandat 85.867 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 85.905 kb on + strand, within CA264_00385at 86.093 kb on + strand, within CA264_00385at 86.093 kb on + strand, within CA264_00385at 86.267 kb on + strand, within CA264_00385at 86.267 kb on + strand, within CA264_00385at 86.267 kb on + strand, within CA264_00385at 86.268 kb on - strand, within CA264_00385at 86.300 kb on + strand, within CA264_00385at 86.301 kb on - strand, within CA264_00385at 86.304 kb on + strand, within CA264_00385at 86.346 kb on - strand, within CA264_00385at 86.350 kb on - strand, within CA264_00385at 86.350 kb on - strand, within CA264_00385at 86.366 kb on - strand, within CA264_00385at 86.486 kb on - strandat 86.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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84,141 + CA264_00370 0.36 -0.0
84,142 - CA264_00370 0.36 -0.9
84,142 - CA264_00370 0.36 -0.2
84,158 - CA264_00370 0.40 -0.8
84,160 - CA264_00370 0.41 -0.6
84,166 + CA264_00370 0.42 +0.5
84,167 - CA264_00370 0.42 -0.1
84,169 - CA264_00370 0.43 -0.3
84,240 - CA264_00370 0.61 -1.7
84,240 - CA264_00370 0.61 -0.3
84,240 - CA264_00370 0.61 +2.0
84,240 - CA264_00370 0.61 -1.0
84,281 + CA264_00370 0.71 +0.3
84,283 + CA264_00370 0.72 +0.7
84,292 + CA264_00370 0.74 +0.3
84,319 - CA264_00370 0.81 -0.7
84,322 - CA264_00370 0.82 +0.1
84,392 + +0.7
84,393 - -0.6
84,432 + +0.3
84,437 + -0.3
84,451 + -0.6
84,453 + -0.1
84,489 + -0.5
84,522 + -1.4
84,549 + -0.8
84,550 - +0.7
84,558 + -0.5
84,558 + -0.4
84,571 + -0.5
84,585 + CA264_00375 0.11 +0.1
84,598 + CA264_00375 0.14 +0.2
84,666 + CA264_00375 0.28 -1.5
84,667 - CA264_00375 0.28 -1.3
84,720 + CA264_00375 0.39 -0.6
84,721 - CA264_00375 0.40 -0.2
84,750 + CA264_00375 0.46 -0.1
84,751 - CA264_00375 0.46 -1.6
84,751 - CA264_00375 0.46 -1.3
84,752 + CA264_00375 0.46 +0.6
84,752 + CA264_00375 0.46 -0.0
84,752 + CA264_00375 0.46 -0.5
84,753 - CA264_00375 0.46 -0.8
84,753 - CA264_00375 0.46 +0.2
84,773 - CA264_00375 0.51 +0.2
84,778 + CA264_00375 0.52 +0.1
84,784 + CA264_00375 0.53 -0.5
84,785 - CA264_00375 0.53 -0.6
84,806 - CA264_00375 0.58 -0.4
84,856 - CA264_00375 0.68 -1.3
84,861 + CA264_00375 0.69 +0.3
84,861 + CA264_00375 0.69 -0.9
84,861 + CA264_00375 0.69 -1.1
84,861 + CA264_00375 0.69 -0.6
84,862 - CA264_00375 0.69 +1.2
84,865 + CA264_00375 0.70 +0.1
84,866 - CA264_00375 0.70 -1.0
84,896 + CA264_00375 0.77 -1.8
84,896 + CA264_00375 0.77 +0.0
84,896 + CA264_00375 0.77 -0.2
84,932 + CA264_00375 0.84 -0.6
84,932 + CA264_00375 0.84 +0.3
84,933 - CA264_00375 0.84 -1.6
84,949 + CA264_00375 0.88 -1.2
84,949 + CA264_00375 0.88 +0.2
84,952 + CA264_00375 0.88 -0.2
85,004 + -0.3
85,005 - -1.5
85,005 - -0.5
85,105 + +1.6
85,107 + +0.1
85,108 - -0.7
85,128 + CA264_00380 0.14 +0.7
85,129 - CA264_00380 0.14 -1.0
85,129 - CA264_00380 0.14 -0.8
85,135 + CA264_00380 0.15 -0.4
85,189 + CA264_00380 0.27 -1.1
85,189 + CA264_00380 0.27 -0.3
85,189 + CA264_00380 0.27 -0.2
85,189 + CA264_00380 0.27 +0.6
85,189 + CA264_00380 0.27 -0.1
85,190 - CA264_00380 0.27 -1.4
85,190 - CA264_00380 0.27 -1.8
85,190 - CA264_00380 0.27 -0.3
85,224 + CA264_00380 0.35 -0.5
85,249 - CA264_00380 0.40 +0.2
85,275 + CA264_00380 0.46 +0.4
85,275 + CA264_00380 0.46 +0.9
85,304 + CA264_00380 0.52 +0.3
85,374 + CA264_00380 0.68 +0.3
85,375 - CA264_00380 0.68 -1.6
85,394 + CA264_00380 0.72 +0.2
85,428 + CA264_00380 0.80 +0.4
85,433 - CA264_00380 0.81 -0.5
85,453 + CA264_00380 0.85 +1.4
85,460 + CA264_00380 0.87 +1.2
85,576 - -1.5
85,678 + -0.8
85,741 + +0.2
85,742 - -0.5
85,742 - -1.1
85,765 - -0.4
85,766 + -0.6
85,766 + +0.2
85,767 - -0.8
85,782 + -0.5
85,867 + CA264_00385 0.19 -0.2
85,905 + CA264_00385 0.23 -0.4
85,905 + CA264_00385 0.23 +1.2
85,905 + CA264_00385 0.23 -0.8
85,905 + CA264_00385 0.23 -0.4
86,093 + CA264_00385 0.45 +0.2
86,093 + CA264_00385 0.45 -0.3
86,267 + CA264_00385 0.65 +0.0
86,267 + CA264_00385 0.65 -0.9
86,267 + CA264_00385 0.65 -0.3
86,268 - CA264_00385 0.65 -0.4
86,300 + CA264_00385 0.69 +0.1
86,301 - CA264_00385 0.69 -0.3
86,304 + CA264_00385 0.69 -0.6
86,346 - CA264_00385 0.74 +0.7
86,350 - CA264_00385 0.75 -0.4
86,350 - CA264_00385 0.75 -0.8
86,366 - CA264_00385 0.76 -0.3
86,486 - -0.8
86,486 - -0.8

Or see this region's nucleotide sequence