Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00345 and CA264_00350 are separated by 149 nucleotides CA264_00350 and CA264_00355 are separated by 76 nucleotides CA264_00355 and CA264_00360 are separated by 208 nucleotides
CA264_00345: CA264_00345 - peptidyl-prolyl cis-trans isomerase, at 79,336 to 79,794
_00345
CA264_00350: CA264_00350 - hypothetical protein, at 79,944 to 80,618
_00350
CA264_00355: CA264_00355 - short-chain dehydrogenase, at 80,695 to 81,396
_00355
CA264_00360: CA264_00360 - ribosome small subunit-dependent GTPase A, at 81,605 to 82,528
_00360
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.705 kb on + strand, within CA264_00345 at 79.713 kb on + strand, within CA264_00345 at 79.759 kb on + strand at 79.802 kb on - strand at 79.808 kb on + strand at 79.824 kb on - strand at 79.825 kb on + strand at 79.825 kb on + strand at 79.825 kb on + strand at 79.826 kb on - strand at 79.843 kb on - strand at 79.913 kb on - strand at 79.916 kb on + strand at 79.920 kb on + strand at 79.920 kb on + strand at 79.921 kb on - strand at 79.921 kb on - strand at 79.968 kb on + strand at 79.969 kb on - strand at 79.989 kb on - strand at 80.103 kb on - strand, within CA264_00350 at 80.182 kb on + strand, within CA264_00350 at 80.183 kb on - strand, within CA264_00350 at 80.239 kb on - strand, within CA264_00350 at 80.310 kb on + strand, within CA264_00350 at 80.310 kb on + strand, within CA264_00350 at 80.446 kb on + strand, within CA264_00350 at 80.456 kb on - strand, within CA264_00350 at 80.456 kb on - strand, within CA264_00350 at 80.546 kb on - strand, within CA264_00350 at 80.546 kb on - strand, within CA264_00350 at 80.599 kb on + strand at 80.658 kb on + strand at 80.696 kb on + strand at 80.852 kb on - strand, within CA264_00355 at 80.876 kb on - strand, within CA264_00355 at 80.888 kb on + strand, within CA264_00355 at 80.889 kb on - strand, within CA264_00355 at 80.952 kb on - strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.084 kb on - strand, within CA264_00355 at 81.192 kb on + strand, within CA264_00355 at 81.193 kb on - strand, within CA264_00355 at 81.205 kb on + strand, within CA264_00355 at 81.213 kb on - strand, within CA264_00355 at 81.250 kb on + strand, within CA264_00355 at 81.301 kb on + strand, within CA264_00355 at 81.376 kb on - strand at 81.399 kb on + strand at 81.488 kb on - strand at 81.543 kb on + strand at 81.544 kb on - strand at 81.596 kb on - strand at 81.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 79,705 + CA264_00345 0.80 -1.3 79,713 + CA264_00345 0.82 -1.4 79,759 + -0.1 79,802 - -1.9 79,808 + -1.6 79,824 - +1.1 79,825 + -0.9 79,825 + -2.3 79,825 + -1.6 79,826 - +0.0 79,843 - -0.1 79,913 - -0.4 79,916 + -0.9 79,920 + -0.8 79,920 + -0.9 79,921 - +0.2 79,921 - +0.2 79,968 + +0.6 79,969 - +0.0 79,989 - +0.3 80,103 - CA264_00350 0.24 +0.4 80,182 + CA264_00350 0.35 +0.8 80,183 - CA264_00350 0.35 -0.3 80,239 - CA264_00350 0.44 +1.8 80,310 + CA264_00350 0.54 +0.7 80,310 + CA264_00350 0.54 +0.4 80,446 + CA264_00350 0.74 +1.2 80,456 - CA264_00350 0.76 -0.5 80,456 - CA264_00350 0.76 +0.2 80,546 - CA264_00350 0.89 -0.4 80,546 - CA264_00350 0.89 +1.2 80,599 + +1.3 80,658 + +1.4 80,696 + +1.5 80,852 - CA264_00355 0.22 +0.6 80,876 - CA264_00355 0.26 -0.6 80,888 + CA264_00355 0.27 +0.7 80,889 - CA264_00355 0.28 +1.8 80,952 - CA264_00355 0.37 -0.1 81,083 + CA264_00355 0.55 +2.1 81,083 + CA264_00355 0.55 -0.0 81,083 + CA264_00355 0.55 +1.4 81,083 + CA264_00355 0.55 +0.3 81,083 + CA264_00355 0.55 +0.6 81,083 + CA264_00355 0.55 +0.2 81,084 - CA264_00355 0.55 -0.4 81,192 + CA264_00355 0.71 -0.6 81,193 - CA264_00355 0.71 +0.4 81,205 + CA264_00355 0.73 +0.4 81,213 - CA264_00355 0.74 +0.2 81,250 + CA264_00355 0.79 +0.3 81,301 + CA264_00355 0.86 +0.5 81,376 - +0.1 81,399 + +1.9 81,488 - +0.4 81,543 + +1.2 81,544 - +0.1 81,596 - +0.4 81,607 - +0.0
Or see this region's nucleotide sequence