Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00175 and CA264_00180 are separated by 94 nucleotides CA264_00180 and CA264_00185 are separated by 624 nucleotides
CA264_00175: CA264_00175 - branched chain amino acid aminotransferase, at 43,302 to 44,375
_00175
CA264_00180: CA264_00180 - peptide chain release factor 2, at 44,470 to 45,547
_00180
CA264_00185: CA264_00185 - SusC/RagA family TonB-linked outer membrane protein, at 46,172 to 49,366
_00185
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1
2 at 43.487 kb on + strand, within CA264_00175 at 43.488 kb on - strand, within CA264_00175 at 43.536 kb on + strand, within CA264_00175 at 43.537 kb on - strand, within CA264_00175 at 43.537 kb on - strand, within CA264_00175 at 43.716 kb on + strand, within CA264_00175 at 43.716 kb on + strand, within CA264_00175 at 43.716 kb on + strand, within CA264_00175 at 43.717 kb on - strand, within CA264_00175 at 43.717 kb on - strand, within CA264_00175 at 43.717 kb on - strand, within CA264_00175 at 43.730 kb on + strand, within CA264_00175 at 43.815 kb on + strand, within CA264_00175 at 43.816 kb on - strand, within CA264_00175 at 43.840 kb on + strand, within CA264_00175 at 43.986 kb on + strand, within CA264_00175 at 44.015 kb on - strand, within CA264_00175 at 44.015 kb on - strand, within CA264_00175 at 44.015 kb on - strand, within CA264_00175 at 44.043 kb on - strand, within CA264_00175 at 44.043 kb on - strand, within CA264_00175 at 44.043 kb on - strand, within CA264_00175 at 44.092 kb on + strand, within CA264_00175 at 44.093 kb on - strand, within CA264_00175 at 44.126 kb on - strand, within CA264_00175 at 44.126 kb on - strand, within CA264_00175 at 44.141 kb on - strand, within CA264_00175 at 44.228 kb on - strand, within CA264_00175 at 44.228 kb on - strand, within CA264_00175 at 44.241 kb on + strand, within CA264_00175 at 44.242 kb on - strand, within CA264_00175 at 44.253 kb on + strand, within CA264_00175 at 44.288 kb on - strand at 44.373 kb on + strand at 44.378 kb on + strand at 44.381 kb on + strand at 44.385 kb on + strand at 44.386 kb on - strand at 44.387 kb on + strand at 44.388 kb on - strand at 44.388 kb on - strand at 44.407 kb on + strand at 44.407 kb on + strand at 44.408 kb on - strand at 44.409 kb on + strand at 44.410 kb on - strand at 44.410 kb on - strand at 44.410 kb on - strand at 44.422 kb on - strand at 44.422 kb on - strand at 44.423 kb on + strand at 44.453 kb on + strand at 44.454 kb on - strand at 44.454 kb on - strand at 44.454 kb on - strand at 44.454 kb on - strand at 44.455 kb on + strand at 44.463 kb on + strand at 45.585 kb on + strand at 45.586 kb on - strand at 45.586 kb on - strand at 45.606 kb on - strand at 45.606 kb on - strand at 45.608 kb on - strand at 45.639 kb on - strand at 45.697 kb on + strand at 45.717 kb on + strand at 45.718 kb on - strand at 45.735 kb on + strand at 45.740 kb on + strand at 45.791 kb on - strand at 45.792 kb on + strand at 45.865 kb on + strand at 45.866 kb on - strand at 45.877 kb on + strand at 45.877 kb on + strand at 45.881 kb on - strand at 45.904 kb on - strand at 45.911 kb on + strand at 45.911 kb on + strand at 45.911 kb on + strand at 45.933 kb on - strand at 45.942 kb on - strand at 45.989 kb on - strand at 45.999 kb on + strand at 45.999 kb on + strand at 45.999 kb on + strand at 46.056 kb on - strand at 46.157 kb on - strand at 46.169 kb on + strand at 46.182 kb on + strand at 46.260 kb on + strand at 46.316 kb on - strand at 46.378 kb on + strand at 46.387 kb on + strand at 46.387 kb on + strand at 46.516 kb on + strand, within CA264_00185
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 43,487 + CA264_00175 0.17 -0.4 43,488 - CA264_00175 0.17 +0.8 43,536 + CA264_00175 0.22 -0.3 43,537 - CA264_00175 0.22 +0.2 43,537 - CA264_00175 0.22 -0.7 43,716 + CA264_00175 0.39 +0.5 43,716 + CA264_00175 0.39 +0.1 43,716 + CA264_00175 0.39 +0.1 43,717 - CA264_00175 0.39 +0.1 43,717 - CA264_00175 0.39 +0.1 43,717 - CA264_00175 0.39 +0.0 43,730 + CA264_00175 0.40 +0.3 43,815 + CA264_00175 0.48 -0.1 43,816 - CA264_00175 0.48 +0.1 43,840 + CA264_00175 0.50 +0.2 43,986 + CA264_00175 0.64 -0.4 44,015 - CA264_00175 0.66 -0.3 44,015 - CA264_00175 0.66 -0.6 44,015 - CA264_00175 0.66 -0.8 44,043 - CA264_00175 0.69 +0.1 44,043 - CA264_00175 0.69 +1.5 44,043 - CA264_00175 0.69 +0.6 44,092 + CA264_00175 0.74 +0.1 44,093 - CA264_00175 0.74 -0.4 44,126 - CA264_00175 0.77 +0.5 44,126 - CA264_00175 0.77 +0.2 44,141 - CA264_00175 0.78 -0.5 44,228 - CA264_00175 0.86 +0.5 44,228 - CA264_00175 0.86 +0.4 44,241 + CA264_00175 0.87 -1.4 44,242 - CA264_00175 0.88 +0.2 44,253 + CA264_00175 0.89 -1.2 44,288 - -0.1 44,373 + +0.5 44,378 + +0.7 44,381 + +0.5 44,385 + +0.0 44,386 - -0.9 44,387 + +0.2 44,388 - -0.2 44,388 - -0.1 44,407 + -0.2 44,407 + -0.2 44,408 - -0.1 44,409 + +0.4 44,410 - -0.4 44,410 - -1.2 44,410 - +0.3 44,422 - +0.1 44,422 - -0.4 44,423 + -0.3 44,453 + -0.3 44,454 - +0.4 44,454 - -0.2 44,454 - -0.3 44,454 - -0.1 44,455 + +0.7 44,463 + +0.4 45,585 + +0.9 45,586 - -0.5 45,586 - -0.7 45,606 - -0.2 45,606 - +0.4 45,608 - +0.5 45,639 - +1.3 45,697 + +0.8 45,717 + +1.5 45,718 - +0.1 45,735 + +0.5 45,740 + +0.5 45,791 - +0.9 45,792 + +1.5 45,865 + +2.0 45,866 - +1.1 45,877 + +0.9 45,877 + +1.2 45,881 - +0.9 45,904 - +1.0 45,911 + +1.2 45,911 + +1.1 45,911 + +2.2 45,933 - +0.6 45,942 - +1.0 45,989 - -0.1 45,999 + +1.5 45,999 + +0.9 45,999 + +1.2 46,056 - -0.4 46,157 - +1.0 46,169 + +0.1 46,182 + -0.2 46,260 + +0.2 46,316 - +0.2 46,378 + +0.1 46,387 + +0.7 46,387 + -0.4 46,516 + CA264_00185 0.11 -0.8
Or see this region's nucleotide sequence