Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23715 and PS417_23720 are separated by 48 nucleotides PS417_23720 and PS417_23725 are separated by 15 nucleotides PS417_23725 and PS417_23730 are separated by 131 nucleotides
PS417_23715: PS417_23715 - cupin, at 5,127,884 to 5,128,228
_23715
PS417_23720: PS417_23720 - 3-hydroxyisobutyrate dehydrogenase, at 5,128,277 to 5,129,164
_23720
PS417_23725: PS417_23725 - methylmalonate-semialdehyde dehydrogenase, at 5,129,180 to 5,130,697
_23725
PS417_23730: PS417_23730 - LysR family transcriptional regulator, at 5,130,829 to 5,131,776
_23730
Position (kb) 5129
5130
5131 Strain fitness (log2 ratio) -1
0
1 at 5128.207 kb on + strand at 5128.208 kb on - strand at 5128.279 kb on - strand at 5128.300 kb on + strand at 5128.301 kb on - strand at 5128.304 kb on - strand at 5128.512 kb on + strand, within PS417_23720 at 5128.512 kb on + strand at 5128.513 kb on - strand, within PS417_23720 at 5129.541 kb on + strand, within PS417_23725 at 5130.273 kb on + strand, within PS417_23725 at 5130.273 kb on + strand, within PS417_23725 at 5130.274 kb on - strand, within PS417_23725 at 5130.277 kb on + strand, within PS417_23725 at 5130.716 kb on + strand at 5130.717 kb on - strand at 5130.717 kb on - strand at 5130.720 kb on + strand at 5130.721 kb on - strand at 5130.721 kb on - strand at 5130.782 kb on + strand at 5130.782 kb on + strand at 5130.782 kb on + strand at 5130.783 kb on - strand at 5130.783 kb on - strand at 5130.783 kb on - strand at 5130.783 kb on - strand at 5130.944 kb on - strand, within PS417_23730 at 5130.944 kb on - strand, within PS417_23730 at 5131.316 kb on - strand, within PS417_23730 at 5131.316 kb on - strand, within PS417_23730 at 5131.355 kb on - strand, within PS417_23730 at 5131.369 kb on + strand, within PS417_23730 at 5131.370 kb on - strand, within PS417_23730 at 5131.370 kb on - strand, within PS417_23730 at 5131.426 kb on - strand, within PS417_23730 at 5131.432 kb on + strand, within PS417_23730 at 5131.432 kb on + strand, within PS417_23730 at 5131.432 kb on + strand, within PS417_23730 at 5131.432 kb on + strand, within PS417_23730 at 5131.512 kb on + strand, within PS417_23730 at 5131.531 kb on + strand, within PS417_23730 at 5131.531 kb on + strand, within PS417_23730 at 5131.532 kb on - strand, within PS417_23730 at 5131.627 kb on - strand, within PS417_23730 at 5131.651 kb on + strand at 5131.651 kb on + strand, within PS417_23730 at 5131.651 kb on + strand, within PS417_23730 at 5131.652 kb on - strand, within PS417_23730 at 5131.686 kb on + strand at 5131.686 kb on + strand at 5131.687 kb on - strand at 5131.687 kb on - strand at 5131.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol% remove 5,128,207 + +1.4 5,128,208 - -1.4 5,128,279 - -0.2 5,128,300 + +0.4 5,128,301 - +1.0 5,128,304 - -0.4 5,128,512 + PS417_23720 0.26 +0.8 5,128,512 + -0.0 5,128,513 - PS417_23720 0.27 -0.0 5,129,541 + PS417_23725 0.24 -1.0 5,130,273 + PS417_23725 0.72 -0.6 5,130,273 + PS417_23725 0.72 -0.7 5,130,274 - PS417_23725 0.72 +0.2 5,130,277 + PS417_23725 0.72 -1.3 5,130,716 + -0.6 5,130,717 - +1.0 5,130,717 - +0.3 5,130,720 + +0.2 5,130,721 - +0.2 5,130,721 - +0.2 5,130,782 + -0.4 5,130,782 + +0.4 5,130,782 + +0.3 5,130,783 - -0.3 5,130,783 - +0.0 5,130,783 - +0.4 5,130,783 - +0.3 5,130,944 - PS417_23730 0.12 +0.0 5,130,944 - PS417_23730 0.12 -0.2 5,131,316 - PS417_23730 0.51 +0.6 5,131,316 - PS417_23730 0.51 +1.6 5,131,355 - PS417_23730 0.55 -0.0 5,131,369 + PS417_23730 0.57 +0.2 5,131,370 - PS417_23730 0.57 +0.4 5,131,370 - PS417_23730 0.57 -0.1 5,131,426 - PS417_23730 0.63 +0.1 5,131,432 + PS417_23730 0.64 -0.4 5,131,432 + PS417_23730 0.64 -0.5 5,131,432 + PS417_23730 0.64 +0.3 5,131,432 + PS417_23730 0.64 -0.2 5,131,512 + PS417_23730 0.72 +0.6 5,131,531 + PS417_23730 0.74 -0.3 5,131,531 + PS417_23730 0.74 -0.2 5,131,532 - PS417_23730 0.74 +0.3 5,131,627 - PS417_23730 0.84 +0.1 5,131,651 + +0.4 5,131,651 + PS417_23730 0.87 +0.3 5,131,651 + PS417_23730 0.87 -0.1 5,131,652 - PS417_23730 0.87 +0.9 5,131,686 + +0.5 5,131,686 + -1.6 5,131,687 - -0.9 5,131,687 - +0.1 5,131,687 - +0.4
Or see this region's nucleotide sequence