Strain Fitness in Pseudomonas simiae WCS417 around PS417_23205

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23200 and PS417_23205 are separated by 50 nucleotidesPS417_23205 and PS417_23210 are separated by 291 nucleotides PS417_23200: PS417_23200 - cysteine desulfurase, at 5,025,811 to 5,027,025 _23200 PS417_23205: PS417_23205 - transcriptional regulator, at 5,027,076 to 5,027,567 _23205 PS417_23210: PS417_23210 - serine acetyltransferase, at 5,027,859 to 5,028,641 _23210 Position (kb) 5027 5028Strain fitness (log2 ratio) -1 0 1 2at 5027.349 kb on - strand, within PS417_23205at 5027.447 kb on - strand, within PS417_23205at 5027.576 kb on - strandat 5027.576 kb on - strandat 5027.576 kb on - strandat 5027.870 kb on - strandat 5028.065 kb on - strand, within PS417_23210

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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5,027,349 - PS417_23205 0.55 -0.1
5,027,447 - PS417_23205 0.75 -1.3
5,027,576 - +1.8
5,027,576 - -0.0
5,027,576 - -0.6
5,027,870 - +1.7
5,028,065 - PS417_23210 0.26 -0.1

Or see this region's nucleotide sequence