Strain Fitness in Pseudomonas simiae WCS417 around PS417_22050

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22040 and PS417_22045 are separated by 127 nucleotidesPS417_22045 and PS417_22050 are separated by 3 nucleotidesPS417_22050 and PS417_22055 are separated by 176 nucleotidesPS417_22055 and PS417_22060 are separated by 199 nucleotides PS417_22040: PS417_22040 - GNAT family acetyltransferase, at 4,777,199 to 4,777,639 _22040 PS417_22045: PS417_22045 - peptide deformylase, at 4,777,767 to 4,778,306 _22045 PS417_22050: PS417_22050 - ribonuclease BN, at 4,778,310 to 4,779,260 _22050 PS417_22055: PS417_22055 - hypothetical protein, at 4,779,437 to 4,779,628 _22055 PS417_22060: PS417_22060 - hypothetical protein, at 4,779,828 to 4,780,205 _22060 Position (kb) 4778 4779 4780Strain fitness (log2 ratio) -2 -1 0 1at 4777.499 kb on + strand, within PS417_22040at 4777.499 kb on + strand, within PS417_22040at 4777.500 kb on - strand, within PS417_22040at 4777.500 kb on - strandat 4777.565 kb on + strand, within PS417_22040at 4777.565 kb on + strand, within PS417_22040at 4777.849 kb on + strand, within PS417_22045at 4777.850 kb on - strand, within PS417_22045at 4778.530 kb on + strand, within PS417_22050at 4778.530 kb on + strand, within PS417_22050at 4778.530 kb on + strand, within PS417_22050at 4778.531 kb on - strand, within PS417_22050at 4778.531 kb on - strand, within PS417_22050at 4778.531 kb on - strand, within PS417_22050at 4778.531 kb on - strand, within PS417_22050at 4778.563 kb on + strand, within PS417_22050at 4778.564 kb on - strand, within PS417_22050at 4778.564 kb on - strand, within PS417_22050at 4778.662 kb on + strand, within PS417_22050at 4778.662 kb on + strand, within PS417_22050at 4778.666 kb on - strand, within PS417_22050at 4779.172 kb on + strandat 4779.173 kb on - strandat 4779.261 kb on - strandat 4779.333 kb on + strandat 4779.334 kb on - strandat 4779.334 kb on - strandat 4779.365 kb on + strandat 4779.631 kb on + strandat 4779.631 kb on + strandat 4779.667 kb on - strandat 4779.827 kb on + strandat 4779.981 kb on + strand, within PS417_22060at 4780.089 kb on - strand, within PS417_22060

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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4,777,499 + PS417_22040 0.68 +0.2
4,777,499 + PS417_22040 0.68 -0.2
4,777,500 - PS417_22040 0.68 -0.4
4,777,500 - +0.1
4,777,565 + PS417_22040 0.83 +0.5
4,777,565 + PS417_22040 0.83 -0.5
4,777,849 + PS417_22045 0.15 -0.5
4,777,850 - PS417_22045 0.15 +0.0
4,778,530 + PS417_22050 0.23 -0.1
4,778,530 + PS417_22050 0.23 -1.1
4,778,530 + PS417_22050 0.23 +0.0
4,778,531 - PS417_22050 0.23 -0.8
4,778,531 - PS417_22050 0.23 -0.5
4,778,531 - PS417_22050 0.23 -0.1
4,778,531 - PS417_22050 0.23 -0.9
4,778,563 + PS417_22050 0.27 -0.9
4,778,564 - PS417_22050 0.27 -1.1
4,778,564 - PS417_22050 0.27 +1.2
4,778,662 + PS417_22050 0.37 -1.9
4,778,662 + PS417_22050 0.37 -0.4
4,778,666 - PS417_22050 0.37 -1.5
4,779,172 + -0.8
4,779,173 - -1.6
4,779,261 - -0.7
4,779,333 + -1.1
4,779,334 - -0.2
4,779,334 - +0.5
4,779,365 + -0.6
4,779,631 + +0.9
4,779,631 + +0.4
4,779,667 - +0.2
4,779,827 + +0.6
4,779,981 + PS417_22060 0.40 -0.1
4,780,089 - PS417_22060 0.69 +1.1

Or see this region's nucleotide sequence