Strain Fitness in Pseudomonas simiae WCS417 around PS417_21680

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21675 and PS417_21680 are separated by 29 nucleotidesPS417_21680 and PS417_21685 are separated by 11 nucleotidesPS417_21685 and PS417_21690 are separated by 39 nucleotides PS417_21675: PS417_21675 - hypothetical protein, at 4,701,291 to 4,702,835 _21675 PS417_21680: PS417_21680 - succinylglutamate desuccinylase, at 4,702,865 to 4,703,869 _21680 PS417_21685: PS417_21685 - topoisomerase II, at 4,703,881 to 4,704,171 _21685 PS417_21690: PS417_21690 - N-succinylarginine dihydrolase, at 4,704,211 to 4,705,557 _21690 Position (kb) 4702 4703 4704Strain fitness (log2 ratio) -2 -1 0 1 2at 4701.876 kb on - strand, within PS417_21675at 4701.876 kb on - strand, within PS417_21675at 4701.912 kb on + strand, within PS417_21675at 4701.913 kb on - strand, within PS417_21675at 4701.913 kb on - strand, within PS417_21675at 4701.937 kb on + strand, within PS417_21675at 4702.273 kb on + strand, within PS417_21675at 4702.274 kb on - strand, within PS417_21675at 4702.467 kb on - strandat 4702.510 kb on + strand, within PS417_21675at 4702.511 kb on - strand, within PS417_21675at 4702.511 kb on - strand, within PS417_21675at 4702.574 kb on - strand, within PS417_21675at 4702.584 kb on + strand, within PS417_21675at 4702.652 kb on + strand, within PS417_21675at 4702.652 kb on + strand, within PS417_21675at 4702.652 kb on + strand, within PS417_21675at 4702.652 kb on + strand, within PS417_21675at 4702.653 kb on - strand, within PS417_21675at 4702.824 kb on + strandat 4702.824 kb on + strandat 4702.824 kb on + strandat 4702.825 kb on - strandat 4702.825 kb on - strandat 4702.825 kb on - strandat 4702.945 kb on + strandat 4702.946 kb on - strandat 4703.233 kb on + strand, within PS417_21680at 4703.259 kb on + strand, within PS417_21680at 4703.259 kb on + strand, within PS417_21680at 4703.883 kb on - strandat 4704.171 kb on + strandat 4704.176 kb on + strandat 4704.177 kb on - strandat 4704.189 kb on + strandat 4704.190 kb on - strandat 4704.190 kb on - strandat 4704.213 kb on - strandat 4704.540 kb on - strand, within PS417_21690at 4704.632 kb on + strand, within PS417_21690at 4704.632 kb on + strand, within PS417_21690at 4704.633 kb on - strand, within PS417_21690at 4704.767 kb on + strand, within PS417_21690at 4704.767 kb on + strandat 4704.767 kb on + strand, within PS417_21690at 4704.768 kb on - strand, within PS417_21690at 4704.851 kb on + strand, within PS417_21690

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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4,701,876 - PS417_21675 0.38 +0.3
4,701,876 - PS417_21675 0.38 -0.6
4,701,912 + PS417_21675 0.40 -0.4
4,701,913 - PS417_21675 0.40 +0.6
4,701,913 - PS417_21675 0.40 +0.5
4,701,937 + PS417_21675 0.42 -0.3
4,702,273 + PS417_21675 0.64 +0.7
4,702,274 - PS417_21675 0.64 -0.5
4,702,467 - +2.4
4,702,510 + PS417_21675 0.79 +0.3
4,702,511 - PS417_21675 0.79 +0.1
4,702,511 - PS417_21675 0.79 +0.0
4,702,574 - PS417_21675 0.83 +0.2
4,702,584 + PS417_21675 0.84 -0.3
4,702,652 + PS417_21675 0.88 +0.3
4,702,652 + PS417_21675 0.88 +1.0
4,702,652 + PS417_21675 0.88 -0.2
4,702,652 + PS417_21675 0.88 +0.5
4,702,653 - PS417_21675 0.88 +0.1
4,702,824 + -0.0
4,702,824 + +1.2
4,702,824 + +1.2
4,702,825 - -0.5
4,702,825 - -0.5
4,702,825 - +0.1
4,702,945 + -2.3
4,702,946 - -1.0
4,703,233 + PS417_21680 0.37 -1.6
4,703,259 + PS417_21680 0.39 -1.1
4,703,259 + PS417_21680 0.39 +0.0
4,703,883 - -0.2
4,704,171 + -0.3
4,704,176 + -0.9
4,704,177 - +0.4
4,704,189 + -0.1
4,704,190 - +0.0
4,704,190 - -0.2
4,704,213 - +0.7
4,704,540 - PS417_21690 0.24 -0.3
4,704,632 + PS417_21690 0.31 -0.6
4,704,632 + PS417_21690 0.31 -0.9
4,704,633 - PS417_21690 0.31 -0.4
4,704,767 + PS417_21690 0.41 +0.4
4,704,767 + -0.7
4,704,767 + PS417_21690 0.41 -1.2
4,704,768 - PS417_21690 0.41 -0.1
4,704,851 + PS417_21690 0.48 -0.4

Or see this region's nucleotide sequence