Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21175 and PS417_21180 are separated by 389 nucleotides PS417_21180 and PS417_21185 are separated by 296 nucleotides PS417_21185 and PS417_21190 are separated by 296 nucleotides PS417_21190 and PS417_21195 are separated by 336 nucleotides
PS417_21175: PS417_21175 - hypothetical protein, at 4,605,978 to 4,606,610
_21175
PS417_21180: PS417_21180 - short-chain dehydrogenase, at 4,607,000 to 4,607,269
_21180
PS417_21185: PS417_21185 - hypothetical protein, at 4,607,566 to 4,608,660
_21185
PS417_21190: PS417_21190 - tRNA-Ser, at 4,608,957 to 4,609,046
_21190
PS417_21195: PS417_21195 - enoyl-CoA hydratase, at 4,609,383 to 4,610,075
_21195
Position (kb)
4607
4608
4609 Strain fitness (log2 ratio)
-2
-1
0
1 at 4606.609 kb on - strand at 4606.638 kb on - strand at 4606.648 kb on + strand at 4606.648 kb on + strand at 4606.648 kb on + strand at 4606.648 kb on + strand at 4606.648 kb on + strand at 4606.648 kb on + strand at 4606.648 kb on + strand at 4606.649 kb on - strand at 4606.649 kb on - strand at 4606.649 kb on - strand at 4606.649 kb on - strand at 4606.649 kb on - strand at 4606.708 kb on + strand at 4606.750 kb on - strand at 4606.751 kb on + strand at 4606.751 kb on + strand at 4606.797 kb on - strand at 4606.848 kb on + strand at 4606.863 kb on + strand at 4606.863 kb on + strand at 4606.932 kb on + strand at 4606.994 kb on + strand at 4607.009 kb on + strand at 4607.009 kb on + strand at 4607.009 kb on + strand at 4607.009 kb on + strand at 4607.010 kb on - strand at 4607.010 kb on - strand at 4607.010 kb on - strand at 4607.010 kb on - strand at 4607.014 kb on - strand at 4607.014 kb on - strand at 4607.014 kb on - strand at 4607.142 kb on + strand, within PS417_21180 at 4607.147 kb on - strand, within PS417_21180 at 4607.147 kb on - strand, within PS417_21180 at 4607.155 kb on - strand, within PS417_21180 at 4607.239 kb on - strand, within PS417_21180 at 4607.275 kb on - strand at 4607.289 kb on + strand at 4607.324 kb on + strand at 4607.381 kb on + strand at 4607.404 kb on + strand at 4607.405 kb on - strand at 4607.423 kb on + strand at 4607.425 kb on + strand at 4607.425 kb on + strand at 4607.426 kb on - strand at 4607.426 kb on - strand at 4607.426 kb on - strand at 4607.429 kb on + strand at 4607.429 kb on + strand at 4607.429 kb on + strand at 4607.429 kb on + strand at 4607.430 kb on - strand at 4607.430 kb on - strand at 4607.430 kb on - strand at 4607.890 kb on - strand, within PS417_21185 at 4608.480 kb on + strand, within PS417_21185 at 4608.480 kb on + strand, within PS417_21185 at 4608.481 kb on - strand, within PS417_21185 at 4608.610 kb on + strand at 4608.851 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.255 kb on + strand at 4609.256 kb on - strand at 4609.256 kb on - strand at 4609.256 kb on - strand at 4609.256 kb on - strand at 4609.257 kb on + strand at 4609.258 kb on - strand at 4609.340 kb on + strand at 4609.340 kb on + strand at 4609.341 kb on - strand at 4609.343 kb on + strand at 4609.343 kb on + strand at 4609.348 kb on - strand at 4609.348 kb on - strand at 4609.355 kb on + strand at 4609.356 kb on - strand at 4609.356 kb on - strand at 4609.367 kb on + strand at 4609.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol% remove 4,606,609 - -0.4 4,606,638 - +0.6 4,606,648 + -0.0 4,606,648 + +1.0 4,606,648 + -0.2 4,606,648 + +0.4 4,606,648 + +0.4 4,606,648 + +0.1 4,606,648 + +0.1 4,606,649 - +0.1 4,606,649 - +0.6 4,606,649 - +0.1 4,606,649 - -0.5 4,606,649 - +0.5 4,606,708 + -0.1 4,606,750 - -0.2 4,606,751 + +1.1 4,606,751 + +0.2 4,606,797 - -1.1 4,606,848 + +0.3 4,606,863 + -0.1 4,606,863 + -0.2 4,606,932 + +0.1 4,606,994 + +0.2 4,607,009 + -1.3 4,607,009 + -0.1 4,607,009 + -0.3 4,607,009 + +0.2 4,607,010 - +0.3 4,607,010 - +0.3 4,607,010 - -0.4 4,607,010 - -0.4 4,607,014 - +0.0 4,607,014 - -0.5 4,607,014 - +0.4 4,607,142 + PS417_21180 0.53 +0.5 4,607,147 - PS417_21180 0.54 -1.1 4,607,147 - PS417_21180 0.54 +0.1 4,607,155 - PS417_21180 0.57 +0.6 4,607,239 - PS417_21180 0.89 +1.0 4,607,275 - +0.0 4,607,289 + -0.7 4,607,324 + -0.7 4,607,381 + -1.1 4,607,404 + +0.5 4,607,405 - +1.0 4,607,423 + -1.8 4,607,425 + -0.5 4,607,425 + -0.3 4,607,426 - -0.3 4,607,426 - -0.0 4,607,426 - -0.1 4,607,429 + +0.1 4,607,429 + +0.5 4,607,429 + -0.1 4,607,429 + +0.8 4,607,430 - -2.7 4,607,430 - -0.4 4,607,430 - +1.1 4,607,890 - PS417_21185 0.30 +0.1 4,608,480 + PS417_21185 0.83 +0.4 4,608,480 + PS417_21185 0.83 -0.6 4,608,481 - PS417_21185 0.84 -1.4 4,608,610 + -0.8 4,608,851 + -0.1 4,609,255 + +0.2 4,609,255 + +0.9 4,609,255 + +0.1 4,609,255 + +0.0 4,609,255 + +0.5 4,609,255 + -1.8 4,609,255 + -0.5 4,609,255 + -0.8 4,609,255 + +1.4 4,609,255 + -0.9 4,609,256 - +1.2 4,609,256 - +1.5 4,609,256 - -0.2 4,609,256 - -0.9 4,609,257 + +0.2 4,609,258 - -0.2 4,609,340 + -0.2 4,609,340 + -0.1 4,609,341 - -0.8 4,609,343 + -0.0 4,609,343 + +0.0 4,609,348 - -0.2 4,609,348 - +0.3 4,609,355 + -0.4 4,609,356 - -2.2 4,609,356 - -1.9 4,609,367 + +0.6 4,609,367 + -0.1
Or see this region's nucleotide sequence