Strain Fitness in Pseudomonas simiae WCS417 around PS417_21185

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21175 and PS417_21180 are separated by 389 nucleotidesPS417_21180 and PS417_21185 are separated by 296 nucleotidesPS417_21185 and PS417_21190 are separated by 296 nucleotidesPS417_21190 and PS417_21195 are separated by 336 nucleotides PS417_21175: PS417_21175 - hypothetical protein, at 4,605,978 to 4,606,610 _21175 PS417_21180: PS417_21180 - short-chain dehydrogenase, at 4,607,000 to 4,607,269 _21180 PS417_21185: PS417_21185 - hypothetical protein, at 4,607,566 to 4,608,660 _21185 PS417_21190: PS417_21190 - tRNA-Ser, at 4,608,957 to 4,609,046 _21190 PS417_21195: PS417_21195 - enoyl-CoA hydratase, at 4,609,383 to 4,610,075 _21195 Position (kb) 4607 4608 4609Strain fitness (log2 ratio) -2 -1 0 1at 4606.609 kb on - strandat 4606.638 kb on - strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.648 kb on + strandat 4606.649 kb on - strandat 4606.649 kb on - strandat 4606.649 kb on - strandat 4606.649 kb on - strandat 4606.649 kb on - strandat 4606.708 kb on + strandat 4606.750 kb on - strandat 4606.751 kb on + strandat 4606.751 kb on + strandat 4606.797 kb on - strandat 4606.848 kb on + strandat 4606.863 kb on + strandat 4606.863 kb on + strandat 4606.932 kb on + strandat 4606.994 kb on + strandat 4607.009 kb on + strandat 4607.009 kb on + strandat 4607.009 kb on + strandat 4607.009 kb on + strandat 4607.010 kb on - strandat 4607.010 kb on - strandat 4607.010 kb on - strandat 4607.010 kb on - strandat 4607.014 kb on - strandat 4607.014 kb on - strandat 4607.014 kb on - strandat 4607.142 kb on + strand, within PS417_21180at 4607.147 kb on - strand, within PS417_21180at 4607.147 kb on - strand, within PS417_21180at 4607.155 kb on - strand, within PS417_21180at 4607.239 kb on - strand, within PS417_21180at 4607.275 kb on - strandat 4607.289 kb on + strandat 4607.324 kb on + strandat 4607.381 kb on + strandat 4607.404 kb on + strandat 4607.405 kb on - strandat 4607.423 kb on + strandat 4607.425 kb on + strandat 4607.425 kb on + strandat 4607.426 kb on - strandat 4607.426 kb on - strandat 4607.426 kb on - strandat 4607.429 kb on + strandat 4607.429 kb on + strandat 4607.429 kb on + strandat 4607.429 kb on + strandat 4607.430 kb on - strandat 4607.430 kb on - strandat 4607.430 kb on - strandat 4607.890 kb on - strand, within PS417_21185at 4608.480 kb on + strand, within PS417_21185at 4608.480 kb on + strand, within PS417_21185at 4608.481 kb on - strand, within PS417_21185at 4608.610 kb on + strandat 4608.851 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.255 kb on + strandat 4609.256 kb on - strandat 4609.256 kb on - strandat 4609.256 kb on - strandat 4609.256 kb on - strandat 4609.257 kb on + strandat 4609.258 kb on - strandat 4609.340 kb on + strandat 4609.340 kb on + strandat 4609.341 kb on - strandat 4609.343 kb on + strandat 4609.343 kb on + strandat 4609.348 kb on - strandat 4609.348 kb on - strandat 4609.355 kb on + strandat 4609.356 kb on - strandat 4609.356 kb on - strandat 4609.367 kb on + strandat 4609.367 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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4,606,609 - -0.4
4,606,638 - +0.6
4,606,648 + -0.0
4,606,648 + +1.0
4,606,648 + -0.2
4,606,648 + +0.4
4,606,648 + +0.4
4,606,648 + +0.1
4,606,648 + +0.1
4,606,649 - +0.1
4,606,649 - +0.6
4,606,649 - +0.1
4,606,649 - -0.5
4,606,649 - +0.5
4,606,708 + -0.1
4,606,750 - -0.2
4,606,751 + +1.1
4,606,751 + +0.2
4,606,797 - -1.1
4,606,848 + +0.3
4,606,863 + -0.1
4,606,863 + -0.2
4,606,932 + +0.1
4,606,994 + +0.2
4,607,009 + -1.3
4,607,009 + -0.1
4,607,009 + -0.3
4,607,009 + +0.2
4,607,010 - +0.3
4,607,010 - +0.3
4,607,010 - -0.4
4,607,010 - -0.4
4,607,014 - +0.0
4,607,014 - -0.5
4,607,014 - +0.4
4,607,142 + PS417_21180 0.53 +0.5
4,607,147 - PS417_21180 0.54 -1.1
4,607,147 - PS417_21180 0.54 +0.1
4,607,155 - PS417_21180 0.57 +0.6
4,607,239 - PS417_21180 0.89 +1.0
4,607,275 - +0.0
4,607,289 + -0.7
4,607,324 + -0.7
4,607,381 + -1.1
4,607,404 + +0.5
4,607,405 - +1.0
4,607,423 + -1.8
4,607,425 + -0.5
4,607,425 + -0.3
4,607,426 - -0.3
4,607,426 - -0.0
4,607,426 - -0.1
4,607,429 + +0.1
4,607,429 + +0.5
4,607,429 + -0.1
4,607,429 + +0.8
4,607,430 - -2.7
4,607,430 - -0.4
4,607,430 - +1.1
4,607,890 - PS417_21185 0.30 +0.1
4,608,480 + PS417_21185 0.83 +0.4
4,608,480 + PS417_21185 0.83 -0.6
4,608,481 - PS417_21185 0.84 -1.4
4,608,610 + -0.8
4,608,851 + -0.1
4,609,255 + +0.2
4,609,255 + +0.9
4,609,255 + +0.1
4,609,255 + +0.0
4,609,255 + +0.5
4,609,255 + -1.8
4,609,255 + -0.5
4,609,255 + -0.8
4,609,255 + +1.4
4,609,255 + -0.9
4,609,256 - +1.2
4,609,256 - +1.5
4,609,256 - -0.2
4,609,256 - -0.9
4,609,257 + +0.2
4,609,258 - -0.2
4,609,340 + -0.2
4,609,340 + -0.1
4,609,341 - -0.8
4,609,343 + -0.0
4,609,343 + +0.0
4,609,348 - -0.2
4,609,348 - +0.3
4,609,355 + -0.4
4,609,356 - -2.2
4,609,356 - -1.9
4,609,367 + +0.6
4,609,367 + -0.1

Or see this region's nucleotide sequence