Strain Fitness in Pseudomonas simiae WCS417 around PS417_21000
Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.06 vol% |
---|---|---|---|---|---|
remove | |||||
4,567,088 | - | +0.5 | |||
4,567,190 | - | -0.3 | |||
4,567,517 | + | PS417_20995 | 0.38 | -1.5 | |
4,568,069 | - | PS417_21000 | 0.15 | -0.4 | |
4,568,087 | + | PS417_21000 | 0.22 | -0.9 | |
4,568,088 | - | PS417_21000 | 0.22 | -0.4 | |
4,568,332 | + | +0.2 | |||
4,568,333 | - | -0.8 | |||
4,568,333 | - | +0.5 | |||
4,568,345 | - | -0.5 | |||
4,568,358 | - | +0.8 | |||
4,568,358 | - | -0.8 | |||
4,568,546 | + | PS417_21005 | 0.18 | +0.0 | |
4,568,673 | - | PS417_21005 | 0.31 | +0.1 | |
4,568,810 | + | PS417_21005 | 0.45 | -0.4 | |
4,568,811 | - | PS417_21005 | 0.45 | +0.6 | |
4,568,886 | + | PS417_21005 | 0.52 | +0.2 | |
4,568,908 | - | PS417_21005 | 0.55 | +1.3 | |
4,568,908 | - | PS417_21005 | 0.55 | -0.9 | |
4,568,909 | + | PS417_21005 | 0.55 | -0.2 | |
4,568,909 | + | +0.8 | |||
4,568,910 | - | PS417_21005 | 0.55 | +0.2 | |
4,568,910 | - | PS417_21005 | 0.55 | -0.2 | |
4,568,910 | - | PS417_21005 | 0.55 | +0.6 |
Or see this region's nucleotide sequence