Strain Fitness in Pseudomonas simiae WCS417 around PS417_20575

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20570 and PS417_20575 are separated by 351 nucleotidesPS417_20575 and PS417_20580 are separated by 70 nucleotides PS417_20570: PS417_20570 - 3-oxoacyl-ACP synthase, at 4,465,655 to 4,466,776 _20570 PS417_20575: PS417_20575 - ATP-dependent helicase HrpA, at 4,467,128 to 4,471,039 _20575 PS417_20580: PS417_20580 - isocitrate dehydrogenase, at 4,471,110 to 4,472,825 _20580 Position (kb) 4467 4468 4469 4470 4471 4472Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4466.688 kb on + strandat 4466.688 kb on + strandat 4466.689 kb on - strandat 4466.689 kb on - strandat 4466.689 kb on - strandat 4466.742 kb on + strandat 4466.742 kb on + strandat 4466.770 kb on + strandat 4466.788 kb on + strandat 4466.808 kb on + strandat 4466.808 kb on + strandat 4466.808 kb on + strandat 4466.809 kb on - strandat 4466.809 kb on - strandat 4466.809 kb on - strandat 4466.814 kb on + strandat 4466.830 kb on + strandat 4466.830 kb on + strandat 4466.830 kb on + strandat 4466.830 kb on + strandat 4466.831 kb on - strandat 4466.831 kb on - strandat 4466.831 kb on - strandat 4466.831 kb on - strandat 4466.832 kb on + strandat 4466.832 kb on + strandat 4466.832 kb on + strandat 4466.832 kb on + strandat 4466.836 kb on + strandat 4466.918 kb on + strandat 4466.918 kb on + strandat 4466.918 kb on + strandat 4466.918 kb on + strandat 4466.969 kb on + strandat 4466.969 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.051 kb on + strandat 4467.052 kb on - strandat 4467.052 kb on - strandat 4467.052 kb on - strandat 4467.052 kb on - strandat 4467.052 kb on - strandat 4467.052 kb on - strandat 4467.052 kb on - strandat 4467.154 kb on + strandat 4467.301 kb on - strandat 4467.451 kb on - strandat 4467.708 kb on - strandat 4468.641 kb on + strand, within PS417_20575at 4468.828 kb on - strand, within PS417_20575at 4468.998 kb on + strand, within PS417_20575at 4468.999 kb on - strand, within PS417_20575at 4468.999 kb on - strand, within PS417_20575at 4469.106 kb on + strand, within PS417_20575at 4469.271 kb on + strand, within PS417_20575at 4469.271 kb on + strand, within PS417_20575at 4469.272 kb on - strand, within PS417_20575at 4469.352 kb on - strand, within PS417_20575at 4469.352 kb on - strand, within PS417_20575at 4469.481 kb on - strand, within PS417_20575at 4469.784 kb on + strand, within PS417_20575at 4469.831 kb on - strand, within PS417_20575at 4470.048 kb on + strand, within PS417_20575at 4470.048 kb on + strand, within PS417_20575at 4470.048 kb on + strand, within PS417_20575at 4470.048 kb on + strand, within PS417_20575at 4470.048 kb on + strand, within PS417_20575at 4470.049 kb on - strand, within PS417_20575at 4470.174 kb on + strand, within PS417_20575at 4470.174 kb on + strand, within PS417_20575at 4470.332 kb on + strand, within PS417_20575at 4471.044 kb on + strandat 4471.045 kb on - strandat 4471.045 kb on - strandat 4471.048 kb on + strandat 4471.048 kb on + strandat 4471.048 kb on + strandat 4471.048 kb on + strandat 4471.048 kb on + strandat 4471.049 kb on - strandat 4471.049 kb on - strandat 4471.049 kb on - strandat 4471.050 kb on + strandat 4471.050 kb on + strandat 4471.050 kb on + strandat 4471.050 kb on + strandat 4471.050 kb on + strandat 4471.050 kb on + strandat 4471.051 kb on - strandat 4471.051 kb on - strandat 4471.051 kb on - strandat 4471.051 kb on - strandat 4471.051 kb on - strandat 4471.059 kb on + strandat 4471.063 kb on + strandat 4471.063 kb on + strandat 4471.064 kb on - strandat 4471.207 kb on + strandat 4471.207 kb on + strandat 4471.207 kb on + strandat 4471.208 kb on - strandat 4471.287 kb on + strand, within PS417_20580at 4471.288 kb on - strand, within PS417_20580at 4471.288 kb on - strand, within PS417_20580at 4471.405 kb on + strand, within PS417_20580at 4471.677 kb on - strand, within PS417_20580at 4471.745 kb on + strand, within PS417_20580at 4471.746 kb on - strand, within PS417_20580at 4471.848 kb on - strand, within PS417_20580at 4471.848 kb on - strand, within PS417_20580at 4471.852 kb on - strand, within PS417_20580at 4471.852 kb on - strand, within PS417_20580at 4471.852 kb on - strand, within PS417_20580at 4471.852 kb on - strand, within PS417_20580at 4471.852 kb on - strand, within PS417_20580at 4471.934 kb on - strand, within PS417_20580at 4471.934 kb on - strand, within PS417_20580at 4472.006 kb on + strand, within PS417_20580at 4472.006 kb on + strand, within PS417_20580

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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4,466,688 + -0.1
4,466,688 + -0.1
4,466,689 - -0.2
4,466,689 - -2.5
4,466,689 - -0.5
4,466,742 + -0.1
4,466,742 + +0.8
4,466,770 + +0.2
4,466,788 + +0.3
4,466,808 + -1.7
4,466,808 + +0.0
4,466,808 + -0.1
4,466,809 - +1.2
4,466,809 - +0.8
4,466,809 - -0.5
4,466,814 + -0.8
4,466,830 + -1.1
4,466,830 + -0.5
4,466,830 + -0.2
4,466,830 + -0.1
4,466,831 - +0.2
4,466,831 - -2.5
4,466,831 - +0.9
4,466,831 - +0.9
4,466,832 + -0.0
4,466,832 + +0.4
4,466,832 + +0.6
4,466,832 + -0.4
4,466,836 + -0.4
4,466,918 + +0.0
4,466,918 + +0.0
4,466,918 + +0.4
4,466,918 + +0.1
4,466,969 + +1.5
4,466,969 + +0.0
4,467,051 + -0.0
4,467,051 + -0.6
4,467,051 + +0.8
4,467,051 + +0.4
4,467,051 + +0.4
4,467,051 + -1.0
4,467,051 + +0.2
4,467,051 + +0.1
4,467,051 + +0.8
4,467,051 + +0.2
4,467,051 + +0.8
4,467,051 + +0.1
4,467,052 - +0.2
4,467,052 - +0.2
4,467,052 - -0.2
4,467,052 - +0.1
4,467,052 - -0.2
4,467,052 - +0.5
4,467,052 - +0.0
4,467,154 + +0.6
4,467,301 - +0.1
4,467,451 - +0.4
4,467,708 - +1.2
4,468,641 + PS417_20575 0.39 -1.3
4,468,828 - PS417_20575 0.43 -1.7
4,468,998 + PS417_20575 0.48 -1.8
4,468,999 - PS417_20575 0.48 +0.7
4,468,999 - PS417_20575 0.48 -0.6
4,469,106 + PS417_20575 0.51 -1.3
4,469,271 + PS417_20575 0.55 +0.1
4,469,271 + PS417_20575 0.55 -0.5
4,469,272 - PS417_20575 0.55 -0.3
4,469,352 - PS417_20575 0.57 +0.0
4,469,352 - PS417_20575 0.57 -1.4
4,469,481 - PS417_20575 0.60 -1.0
4,469,784 + PS417_20575 0.68 -0.0
4,469,831 - PS417_20575 0.69 -0.7
4,470,048 + PS417_20575 0.75 -0.8
4,470,048 + PS417_20575 0.75 -0.2
4,470,048 + PS417_20575 0.75 -1.5
4,470,048 + PS417_20575 0.75 -2.8
4,470,048 + PS417_20575 0.75 -0.6
4,470,049 - PS417_20575 0.75 -0.8
4,470,174 + PS417_20575 0.78 -0.4
4,470,174 + PS417_20575 0.78 -0.7
4,470,332 + PS417_20575 0.82 -0.5
4,471,044 + -0.2
4,471,045 - +0.7
4,471,045 - -0.5
4,471,048 + -1.0
4,471,048 + -0.3
4,471,048 + +0.4
4,471,048 + -0.9
4,471,048 + -0.5
4,471,049 - -0.8
4,471,049 - -0.1
4,471,049 - +1.5
4,471,050 + -1.0
4,471,050 + -0.1
4,471,050 + +0.3
4,471,050 + +0.1
4,471,050 + -0.9
4,471,050 + -1.0
4,471,051 - -0.5
4,471,051 - +0.7
4,471,051 - -0.2
4,471,051 - -1.0
4,471,051 - -0.4
4,471,059 + -0.5
4,471,063 + -0.6
4,471,063 + +1.0
4,471,064 - -0.1
4,471,207 + +0.2
4,471,207 + +0.0
4,471,207 + -0.1
4,471,208 - +0.1
4,471,287 + PS417_20580 0.10 -0.2
4,471,288 - PS417_20580 0.10 +0.1
4,471,288 - PS417_20580 0.10 -0.4
4,471,405 + PS417_20580 0.17 +0.2
4,471,677 - PS417_20580 0.33 +0.4
4,471,745 + PS417_20580 0.37 -0.1
4,471,746 - PS417_20580 0.37 +0.5
4,471,848 - PS417_20580 0.43 -0.3
4,471,848 - PS417_20580 0.43 -0.2
4,471,852 - PS417_20580 0.43 -0.8
4,471,852 - PS417_20580 0.43 +0.2
4,471,852 - PS417_20580 0.43 +1.9
4,471,852 - PS417_20580 0.43 -0.4
4,471,852 - PS417_20580 0.43 -0.2
4,471,934 - PS417_20580 0.48 -0.0
4,471,934 - PS417_20580 0.48 -0.2
4,472,006 + PS417_20580 0.52 -0.2
4,472,006 + PS417_20580 0.52 +0.2

Or see this region's nucleotide sequence