Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20165 and PS417_20170 are separated by 73 nucleotides PS417_20170 and PS417_20175 are separated by 7 nucleotides
PS417_20165: PS417_20165 - hypothetical protein, at 4,377,186 to 4,383,080
_20165
PS417_20170: PS417_20170 - hypothetical protein, at 4,383,154 to 4,383,744
_20170
PS417_20175: PS417_20175 - LysR family transcriptional regulator, at 4,383,752 to 4,384,645
_20175
Position (kb)
4383
4384 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4382.164 kb on + strand, within PS417_20165 at 4382.164 kb on + strand, within PS417_20165 at 4382.165 kb on - strand, within PS417_20165 at 4382.181 kb on - strand, within PS417_20165 at 4382.241 kb on + strand, within PS417_20165 at 4382.242 kb on - strand, within PS417_20165 at 4382.242 kb on - strand, within PS417_20165 at 4382.245 kb on + strand, within PS417_20165 at 4382.245 kb on + strand, within PS417_20165 at 4382.245 kb on + strand, within PS417_20165 at 4382.374 kb on + strand, within PS417_20165 at 4382.374 kb on + strand, within PS417_20165 at 4382.588 kb on + strand at 4382.588 kb on + strand at 4382.589 kb on - strand at 4382.591 kb on - strand at 4382.647 kb on + strand at 4382.772 kb on + strand at 4382.773 kb on - strand at 4382.904 kb on + strand at 4382.904 kb on + strand at 4382.905 kb on - strand at 4382.905 kb on - strand at 4382.905 kb on - strand at 4382.908 kb on + strand at 4382.908 kb on + strand at 4382.908 kb on + strand at 4382.908 kb on + strand at 4382.909 kb on - strand at 4382.909 kb on - strand at 4383.059 kb on + strand at 4383.059 kb on + strand at 4383.059 kb on + strand at 4383.059 kb on + strand at 4383.060 kb on - strand at 4383.060 kb on - strand at 4383.060 kb on - strand at 4383.061 kb on + strand at 4383.061 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.138 kb on + strand at 4383.139 kb on - strand at 4383.139 kb on - strand at 4383.139 kb on - strand at 4383.139 kb on - strand at 4383.142 kb on + strand at 4383.142 kb on + strand at 4383.142 kb on + strand at 4383.143 kb on - strand at 4383.143 kb on - strand at 4383.143 kb on - strand at 4383.145 kb on + strand at 4383.145 kb on + strand at 4383.174 kb on - strand at 4383.174 kb on - strand at 4383.443 kb on - strand, within PS417_20170 at 4383.467 kb on + strand, within PS417_20170 at 4383.545 kb on - strand, within PS417_20170 at 4383.556 kb on + strand, within PS417_20170 at 4383.556 kb on + strand, within PS417_20170 at 4383.556 kb on + strand, within PS417_20170 at 4383.556 kb on + strand, within PS417_20170 at 4383.875 kb on + strand, within PS417_20175 at 4383.912 kb on + strand, within PS417_20175 at 4383.913 kb on - strand, within PS417_20175 at 4383.913 kb on - strand, within PS417_20175 at 4383.936 kb on + strand, within PS417_20175 at 4383.936 kb on + strand, within PS417_20175 at 4383.936 kb on + strand, within PS417_20175 at 4383.936 kb on + strand, within PS417_20175 at 4383.937 kb on - strand, within PS417_20175 at 4383.937 kb on - strand, within PS417_20175 at 4383.937 kb on - strand, within PS417_20175 at 4383.973 kb on + strand, within PS417_20175 at 4383.974 kb on - strand, within PS417_20175 at 4383.974 kb on - strand, within PS417_20175 at 4384.119 kb on + strand, within PS417_20175 at 4384.120 kb on - strand, within PS417_20175 at 4384.152 kb on + strand, within PS417_20175 at 4384.152 kb on + strand, within PS417_20175 at 4384.152 kb on + strand, within PS417_20175 at 4384.152 kb on + strand, within PS417_20175 at 4384.153 kb on - strand, within PS417_20175 at 4384.153 kb on - strand, within PS417_20175 at 4384.262 kb on + strand, within PS417_20175 at 4384.285 kb on - strand, within PS417_20175 at 4384.390 kb on - strand, within PS417_20175 at 4384.527 kb on + strand, within PS417_20175 at 4384.527 kb on + strand, within PS417_20175 at 4384.527 kb on + strand, within PS417_20175 at 4384.527 kb on + strand, within PS417_20175 at 4384.528 kb on - strand, within PS417_20175 at 4384.528 kb on - strand, within PS417_20175 at 4384.677 kb on - strand at 4384.677 kb on - strand at 4384.689 kb on + strand at 4384.689 kb on + strand at 4384.709 kb on + strand at 4384.710 kb on - strand at 4384.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol% remove 4,382,164 + PS417_20165 0.84 -0.9 4,382,164 + PS417_20165 0.84 -2.2 4,382,165 - PS417_20165 0.84 -0.2 4,382,181 - PS417_20165 0.85 +0.1 4,382,241 + PS417_20165 0.86 -0.1 4,382,242 - PS417_20165 0.86 +0.8 4,382,242 - PS417_20165 0.86 +0.7 4,382,245 + PS417_20165 0.86 -0.8 4,382,245 + PS417_20165 0.86 +0.7 4,382,245 + PS417_20165 0.86 +0.1 4,382,374 + PS417_20165 0.88 -0.5 4,382,374 + PS417_20165 0.88 +0.0 4,382,588 + +0.4 4,382,588 + -0.1 4,382,589 - +0.4 4,382,591 - -0.6 4,382,647 + +0.1 4,382,772 + +1.3 4,382,773 - -0.4 4,382,904 + -0.4 4,382,904 + +0.2 4,382,905 - -0.0 4,382,905 - -1.1 4,382,905 - -0.3 4,382,908 + +0.1 4,382,908 + -0.6 4,382,908 + +0.1 4,382,908 + -1.4 4,382,909 - +0.0 4,382,909 - +0.5 4,383,059 + +0.3 4,383,059 + +0.7 4,383,059 + +0.6 4,383,059 + +0.3 4,383,060 - -1.0 4,383,060 - +1.1 4,383,060 - +1.7 4,383,061 + +0.2 4,383,061 + +0.3 4,383,138 + +0.2 4,383,138 + +0.0 4,383,138 + -1.6 4,383,138 + +1.7 4,383,138 + -0.3 4,383,138 + -0.2 4,383,138 + -0.0 4,383,138 + +0.5 4,383,138 + -0.2 4,383,138 + -0.0 4,383,138 + +0.1 4,383,138 + +2.3 4,383,139 - -0.7 4,383,139 - -0.2 4,383,139 - -0.7 4,383,139 - -0.4 4,383,142 + -1.3 4,383,142 + +0.2 4,383,142 + -0.7 4,383,143 - -0.3 4,383,143 - -0.0 4,383,143 - +1.4 4,383,145 + -0.6 4,383,145 + -0.3 4,383,174 - +0.3 4,383,174 - +0.2 4,383,443 - PS417_20170 0.49 -0.9 4,383,467 + PS417_20170 0.53 +0.4 4,383,545 - PS417_20170 0.66 +0.3 4,383,556 + PS417_20170 0.68 -0.7 4,383,556 + PS417_20170 0.68 -1.0 4,383,556 + PS417_20170 0.68 -0.9 4,383,556 + PS417_20170 0.68 -2.9 4,383,875 + PS417_20175 0.14 -2.1 4,383,912 + PS417_20175 0.18 -0.7 4,383,913 - PS417_20175 0.18 +0.7 4,383,913 - PS417_20175 0.18 -0.1 4,383,936 + PS417_20175 0.21 -0.7 4,383,936 + PS417_20175 0.21 +1.3 4,383,936 + PS417_20175 0.21 +0.3 4,383,936 + PS417_20175 0.21 +0.1 4,383,937 - PS417_20175 0.21 -0.2 4,383,937 - PS417_20175 0.21 -0.4 4,383,937 - PS417_20175 0.21 -0.3 4,383,973 + PS417_20175 0.25 -0.4 4,383,974 - PS417_20175 0.25 -0.1 4,383,974 - PS417_20175 0.25 +0.9 4,384,119 + PS417_20175 0.41 -0.5 4,384,120 - PS417_20175 0.41 +0.5 4,384,152 + PS417_20175 0.45 -0.3 4,384,152 + PS417_20175 0.45 -0.7 4,384,152 + PS417_20175 0.45 +0.1 4,384,152 + PS417_20175 0.45 -0.0 4,384,153 - PS417_20175 0.45 -0.9 4,384,153 - PS417_20175 0.45 -0.0 4,384,262 + PS417_20175 0.57 +0.4 4,384,285 - PS417_20175 0.60 +0.0 4,384,390 - PS417_20175 0.71 -0.2 4,384,527 + PS417_20175 0.87 -0.7 4,384,527 + PS417_20175 0.87 -0.1 4,384,527 + PS417_20175 0.87 -0.2 4,384,527 + PS417_20175 0.87 -0.2 4,384,528 - PS417_20175 0.87 -2.1 4,384,528 - PS417_20175 0.87 -1.3 4,384,677 - +0.4 4,384,677 - +0.3 4,384,689 + +1.5 4,384,689 + -0.0 4,384,709 + +2.5 4,384,710 - -0.1 4,384,710 - -1.7
Or see this region's nucleotide sequence