Strain Fitness in Pseudomonas simiae WCS417 around PS417_19430
Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.06 vol% |
---|---|---|---|---|---|
remove | |||||
4,212,589 | + | PS417_19425 | 0.45 | +0.0 | |
4,213,215 | - | +0.4 | |||
4,213,243 | + | +0.1 | |||
4,213,609 | + | PS417_19430 | 0.70 | +0.2 | |
4,213,614 | - | PS417_19430 | 0.71 | -1.1 | |
4,213,699 | + | PS417_19430 | 0.88 | -1.1 | |
4,213,757 | + | -0.4 | |||
4,213,757 | + | +0.4 | |||
4,213,757 | + | -0.7 | |||
4,213,804 | - | -0.1 | |||
4,213,988 | + | PS417_19435 | 0.14 | +0.4 | |
4,213,988 | + | PS417_19435 | 0.14 | -1.8 | |
4,213,989 | - | PS417_19435 | 0.14 | -0.4 | |
4,214,061 | - | PS417_19435 | 0.19 | +0.4 | |
4,214,124 | - | PS417_19435 | 0.24 | -0.1 | |
4,214,124 | - | PS417_19435 | 0.24 | -0.3 | |
4,214,179 | - | PS417_19435 | 0.28 | -0.3 | |
4,214,207 | + | PS417_19435 | 0.30 | -0.5 | |
4,214,328 | - | -0.4 | |||
4,214,486 | + | PS417_19435 | 0.52 | +0.2 | |
4,214,486 | + | PS417_19435 | 0.52 | -0.2 | |
4,214,486 | + | PS417_19435 | 0.52 | -0.2 | |
4,214,486 | + | PS417_19435 | 0.52 | -1.5 | |
4,214,487 | - | PS417_19435 | 0.52 | +0.6 | |
4,214,487 | - | PS417_19435 | 0.52 | -0.8 | |
4,214,540 | + | PS417_19435 | 0.56 | +0.6 | |
4,214,599 | - | PS417_19435 | 0.61 | +0.0 |
Or see this region's nucleotide sequence