Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18685 and PS417_18690 are separated by 344 nucleotides PS417_18690 and PS417_18695 are separated by 100 nucleotides PS417_18695 and PS417_18700 overlap by 4 nucleotides
PS417_18685: PS417_18685 - excinuclease ABC subunit B, at 4,055,789 to 4,057,804
_18685
PS417_18690: PS417_18690 - aromatic amino acid aminotransferase, at 4,058,149 to 4,059,345
_18690
PS417_18695: PS417_18695 - hypothetical protein, at 4,059,446 to 4,059,655
_18695
PS417_18700: PS417_18700 - LysR family transcriptional regulator, at 4,059,652 to 4,060,527
_18700
Position (kb)
4058
4059
4060 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4057.201 kb on - strand, within PS417_18685 at 4057.266 kb on + strand, within PS417_18685 at 4057.347 kb on + strand, within PS417_18685 at 4057.348 kb on - strand, within PS417_18685 at 4057.506 kb on + strand, within PS417_18685 at 4057.507 kb on - strand, within PS417_18685 at 4057.522 kb on - strand, within PS417_18685 at 4057.522 kb on - strand, within PS417_18685 at 4057.524 kb on + strand, within PS417_18685 at 4057.525 kb on - strand, within PS417_18685 at 4057.531 kb on - strand, within PS417_18685 at 4057.534 kb on - strand, within PS417_18685 at 4057.534 kb on - strand, within PS417_18685 at 4057.545 kb on + strand, within PS417_18685 at 4057.804 kb on + strand at 4057.804 kb on + strand at 4057.804 kb on + strand at 4057.804 kb on + strand at 4057.804 kb on + strand at 4057.805 kb on - strand at 4057.805 kb on - strand at 4057.805 kb on - strand at 4057.809 kb on + strand at 4057.809 kb on + strand at 4057.810 kb on - strand at 4057.810 kb on - strand at 4057.856 kb on - strand at 4057.906 kb on - strand at 4057.906 kb on - strand at 4057.911 kb on + strand at 4057.911 kb on + strand at 4057.912 kb on - strand at 4057.912 kb on - strand at 4057.912 kb on - strand at 4057.912 kb on - strand at 4057.914 kb on - strand at 4057.981 kb on + strand at 4057.981 kb on + strand at 4057.981 kb on + strand at 4057.982 kb on - strand at 4057.982 kb on - strand at 4057.982 kb on - strand at 4058.061 kb on + strand at 4058.063 kb on + strand at 4058.063 kb on + strand at 4058.066 kb on + strand at 4058.066 kb on + strand at 4058.066 kb on + strand at 4058.066 kb on + strand at 4058.066 kb on + strand at 4058.066 kb on + strand at 4058.066 kb on + strand at 4058.067 kb on - strand at 4058.090 kb on + strand at 4058.134 kb on - strand at 4058.223 kb on + strand at 4058.260 kb on + strand at 4058.348 kb on - strand, within PS417_18690 at 4059.002 kb on - strand, within PS417_18690 at 4059.002 kb on - strand, within PS417_18690 at 4059.202 kb on + strand, within PS417_18690 at 4059.203 kb on - strand, within PS417_18690 at 4059.203 kb on - strand, within PS417_18690 at 4059.256 kb on + strand at 4059.256 kb on + strand at 4059.257 kb on - strand at 4059.257 kb on - strand at 4059.257 kb on - strand at 4059.276 kb on + strand at 4059.276 kb on + strand at 4059.377 kb on + strand at 4059.408 kb on - strand at 4059.445 kb on + strand at 4059.497 kb on + strand, within PS417_18695 at 4059.875 kb on + strand, within PS417_18700 at 4059.875 kb on + strand, within PS417_18700 at 4059.876 kb on - strand, within PS417_18700 at 4059.971 kb on + strand, within PS417_18700 at 4059.971 kb on + strand, within PS417_18700 at 4059.971 kb on + strand, within PS417_18700 at 4059.971 kb on + strand, within PS417_18700 at 4059.972 kb on - strand, within PS417_18700 at 4060.196 kb on + strand, within PS417_18700 at 4060.196 kb on + strand, within PS417_18700 at 4060.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol% remove 4,057,201 - PS417_18685 0.70 -0.8 4,057,266 + PS417_18685 0.73 +0.2 4,057,347 + PS417_18685 0.77 +0.6 4,057,348 - PS417_18685 0.77 +0.3 4,057,506 + PS417_18685 0.85 +0.6 4,057,507 - PS417_18685 0.85 +0.1 4,057,522 - PS417_18685 0.86 +0.2 4,057,522 - PS417_18685 0.86 -0.0 4,057,524 + PS417_18685 0.86 +0.8 4,057,525 - PS417_18685 0.86 -0.3 4,057,531 - PS417_18685 0.86 +1.0 4,057,534 - PS417_18685 0.87 -0.4 4,057,534 - PS417_18685 0.87 +1.2 4,057,545 + PS417_18685 0.87 +1.0 4,057,804 + +0.4 4,057,804 + -0.0 4,057,804 + -0.4 4,057,804 + -1.0 4,057,804 + -1.0 4,057,805 - +0.2 4,057,805 - +0.5 4,057,805 - -0.9 4,057,809 + -1.0 4,057,809 + -0.2 4,057,810 - +0.4 4,057,810 - -0.3 4,057,856 - -0.1 4,057,906 - -0.0 4,057,906 - +0.1 4,057,911 + -0.0 4,057,911 + -0.4 4,057,912 - -0.0 4,057,912 - -0.0 4,057,912 - +1.6 4,057,912 - +1.0 4,057,914 - +1.6 4,057,981 + +0.7 4,057,981 + +0.6 4,057,981 + -1.0 4,057,982 - +0.1 4,057,982 - -0.3 4,057,982 - -1.4 4,058,061 + +0.3 4,058,063 + -1.0 4,058,063 + -0.7 4,058,066 + +0.0 4,058,066 + -0.4 4,058,066 + +0.1 4,058,066 + -0.5 4,058,066 + -0.4 4,058,066 + +0.5 4,058,066 + +0.2 4,058,067 - +0.6 4,058,090 + -0.6 4,058,134 - -0.1 4,058,223 + +0.7 4,058,260 + -0.5 4,058,348 - PS417_18690 0.17 -0.4 4,059,002 - PS417_18690 0.71 +2.9 4,059,002 - PS417_18690 0.71 -0.6 4,059,202 + PS417_18690 0.88 -0.9 4,059,203 - PS417_18690 0.88 -0.3 4,059,203 - PS417_18690 0.88 -0.8 4,059,256 + -0.7 4,059,256 + -0.6 4,059,257 - -0.2 4,059,257 - -0.7 4,059,257 - -0.7 4,059,276 + -0.3 4,059,276 + -0.5 4,059,377 + +0.7 4,059,408 - +0.6 4,059,445 + +1.0 4,059,497 + PS417_18695 0.24 -0.3 4,059,875 + PS417_18700 0.25 -0.4 4,059,875 + PS417_18700 0.25 +0.9 4,059,876 - PS417_18700 0.26 -0.1 4,059,971 + PS417_18700 0.36 +0.4 4,059,971 + PS417_18700 0.36 +0.1 4,059,971 + PS417_18700 0.36 -0.2 4,059,971 + PS417_18700 0.36 -0.9 4,059,972 - PS417_18700 0.37 -0.6 4,060,196 + PS417_18700 0.62 -0.6 4,060,196 + PS417_18700 0.62 -0.0 4,060,219 - +0.6
Or see this region's nucleotide sequence