Strain Fitness in Pseudomonas simiae WCS417 around PS417_17070
Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.06 vol% |
---|---|---|---|---|---|
remove | |||||
3,728,527 | - | -0.1 | |||
3,728,608 | + | PS417_17065 | 0.44 | +0.0 | |
3,728,609 | - | PS417_17065 | 0.44 | +0.0 | |
3,728,746 | + | PS417_17065 | 0.57 | +0.8 | |
3,728,853 | + | PS417_17065 | 0.67 | +0.7 | |
3,728,873 | - | PS417_17065 | 0.69 | -0.3 | |
3,728,947 | + | PS417_17065 | 0.75 | -0.2 | |
3,729,208 | - | +0.0 | |||
3,729,208 | - | +1.4 | |||
3,729,208 | - | +0.6 | |||
3,729,250 | + | -0.6 | |||
3,729,250 | + | -1.5 | |||
3,729,250 | + | -0.4 | |||
3,729,250 | + | -0.4 | |||
3,729,250 | + | +0.2 | |||
3,729,251 | - | +0.1 | |||
3,729,251 | - | +1.3 | |||
3,729,265 | - | -0.4 | |||
3,729,265 | - | -0.6 | |||
3,729,287 | - | -1.1 | |||
3,729,306 | - | +0.8 | |||
3,729,361 | - | -2.1 | |||
3,729,403 | - | +0.3 | |||
3,729,661 | + | PS417_17070 | 0.55 | -0.9 | |
3,729,663 | - | PS417_17070 | 0.56 | -1.4 | |
3,729,755 | + | PS417_17070 | 0.74 | +1.8 | |
3,729,755 | + | PS417_17070 | 0.74 | +0.3 | |
3,729,755 | + | PS417_17070 | 0.74 | -1.5 | |
3,730,564 | - | +1.1 | |||
3,730,568 | - | +0.1 | |||
3,730,651 | + | -0.0 | |||
3,730,685 | - | +0.3 | |||
3,730,698 | - | +0.3 | |||
3,730,699 | + | +0.4 | |||
3,730,699 | + | +0.9 | |||
3,730,700 | - | +0.7 | |||
3,730,700 | - | -0.7 | |||
3,730,823 | - | PS417_17080 | 0.21 | +0.5 |
Or see this region's nucleotide sequence