Strain Fitness in Pseudomonas simiae WCS417 around PS417_01685

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01680 and PS417_01685 overlap by 1 nucleotidesPS417_01685 and PS417_01690 are separated by 108 nucleotides PS417_01680: PS417_01680 - membrane protein, at 370,851 to 373,922 _01680 PS417_01685: PS417_01685 - membrane protein, at 373,922 to 375,277 _01685 PS417_01690: PS417_01690 - fructose 1,6-bisphosphatase, at 375,386 to 376,396 _01690 Position (kb) 373 374 375 376Strain fitness (log2 ratio) -1 0 1at 373.033 kb on - strand, within PS417_01680at 373.033 kb on - strand, within PS417_01680at 373.151 kb on - strand, within PS417_01680at 373.269 kb on + strand, within PS417_01680at 373.428 kb on + strand, within PS417_01680at 373.429 kb on - strand, within PS417_01680at 373.429 kb on - strand, within PS417_01680at 373.486 kb on - strand, within PS417_01680at 373.869 kb on + strandat 373.870 kb on - strandat 374.048 kb on - strandat 374.142 kb on - strand, within PS417_01685at 374.142 kb on - strand, within PS417_01685at 374.214 kb on - strand, within PS417_01685at 375.078 kb on - strand, within PS417_01685at 375.303 kb on + strandat 375.325 kb on + strandat 375.325 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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373,033 - PS417_01680 0.71 -0.1
373,033 - PS417_01680 0.71 -0.5
373,151 - PS417_01680 0.75 -0.4
373,269 + PS417_01680 0.79 -0.1
373,428 + PS417_01680 0.84 -0.1
373,429 - PS417_01680 0.84 +0.2
373,429 - PS417_01680 0.84 -0.3
373,486 - PS417_01680 0.86 +0.4
373,869 + -0.4
373,870 - -0.6
374,048 - -1.0
374,142 - PS417_01685 0.16 -0.1
374,142 - PS417_01685 0.16 -1.3
374,214 - PS417_01685 0.22 -0.0
375,078 - PS417_01685 0.85 -0.4
375,303 + -0.0
375,325 + +0.5
375,325 + -1.2

Or see this region's nucleotide sequence