Strain Fitness in Pseudomonas simiae WCS417 around PS417_16870

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16860 and PS417_16865 are separated by 101 nucleotidesPS417_16865 and PS417_16870 overlap by 4 nucleotidesPS417_16870 and PS417_16875 are separated by 192 nucleotidesPS417_16875 and PS417_16880 are separated by 112 nucleotides PS417_16860: PS417_16860 - diadenosine tetraphosphate hydrolase, at 3,676,780 to 3,677,238 _16860 PS417_16865: PS417_16865 - HxlR family transcriptional regulator, at 3,677,340 to 3,677,669 _16865 PS417_16870: PS417_16870 - short-chain dehydrogenase, at 3,677,666 to 3,678,448 _16870 PS417_16875: PS417_16875 - signal peptidase, at 3,678,641 to 3,679,309 _16875 PS417_16880: PS417_16880 - deaminase/reductase, at 3,679,422 to 3,679,985 _16880 Position (kb) 3677 3678 3679Strain fitness (log2 ratio) -2 -1 0 1at 3676.723 kb on + strandat 3676.724 kb on - strandat 3676.778 kb on + strandat 3676.842 kb on - strandat 3676.857 kb on + strand, within PS417_16860at 3676.857 kb on + strand, within PS417_16860at 3676.860 kb on - strand, within PS417_16860at 3676.860 kb on - strand, within PS417_16860at 3676.915 kb on - strand, within PS417_16860at 3677.094 kb on - strand, within PS417_16860at 3677.167 kb on - strand, within PS417_16860at 3677.212 kb on - strandat 3677.274 kb on - strandat 3677.274 kb on - strandat 3677.274 kb on - strandat 3677.301 kb on + strandat 3677.335 kb on - strandat 3677.353 kb on - strandat 3677.586 kb on + strand, within PS417_16865at 3677.700 kb on + strandat 3677.994 kb on + strand, within PS417_16870at 3678.197 kb on + strand, within PS417_16870at 3678.428 kb on + strandat 3678.455 kb on + strandat 3678.542 kb on - strandat 3678.606 kb on - strandat 3678.966 kb on + strand, within PS417_16875at 3678.966 kb on + strand, within PS417_16875at 3678.967 kb on - strand, within PS417_16875at 3678.967 kb on - strand, within PS417_16875at 3678.967 kb on - strand, within PS417_16875at 3678.970 kb on + strand, within PS417_16875at 3679.309 kb on + strandat 3679.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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3,676,723 + +0.5
3,676,724 - +0.0
3,676,778 + +0.9
3,676,842 - +0.9
3,676,857 + PS417_16860 0.17 -0.5
3,676,857 + PS417_16860 0.17 -2.1
3,676,860 - PS417_16860 0.17 +0.1
3,676,860 - PS417_16860 0.17 +1.5
3,676,915 - PS417_16860 0.29 +0.2
3,677,094 - PS417_16860 0.68 +0.4
3,677,167 - PS417_16860 0.84 -0.1
3,677,212 - +0.3
3,677,274 - +1.1
3,677,274 - -0.2
3,677,274 - -0.5
3,677,301 + +0.4
3,677,335 - +0.1
3,677,353 - -0.1
3,677,586 + PS417_16865 0.75 -0.4
3,677,700 + +1.1
3,677,994 + PS417_16870 0.42 -1.1
3,678,197 + PS417_16870 0.68 -0.4
3,678,428 + +0.5
3,678,455 + -0.5
3,678,542 - +0.1
3,678,606 - +1.3
3,678,966 + PS417_16875 0.49 +0.6
3,678,966 + PS417_16875 0.49 -0.0
3,678,967 - PS417_16875 0.49 -0.6
3,678,967 - PS417_16875 0.49 +0.6
3,678,967 - PS417_16875 0.49 +0.9
3,678,970 + PS417_16875 0.49 +0.2
3,679,309 + -0.5
3,679,310 - -0.3

Or see this region's nucleotide sequence