Strain Fitness in Pseudomonas simiae WCS417 around PS417_16750

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16745 and PS417_16750 are separated by 360 nucleotidesPS417_16750 and PS417_16755 overlap by 4 nucleotides PS417_16745: PS417_16745 - TetR family transcriptional regulator, at 3,652,483 to 3,653,241 _16745 PS417_16750: PS417_16750 - ABC transporter ATP-binding protein, at 3,653,602 to 3,654,306 _16750 PS417_16755: PS417_16755 - ABC transporter permease, at 3,654,303 to 3,655,520 _16755 Position (kb) 3653 3654 3655Strain fitness (log2 ratio) -1 0 1at 3653.241 kb on + strandat 3653.241 kb on + strandat 3653.242 kb on - strandat 3653.318 kb on - strandat 3653.318 kb on - strandat 3653.334 kb on - strandat 3653.438 kb on + strandat 3653.439 kb on - strandat 3653.610 kb on + strandat 3653.660 kb on - strandat 3653.812 kb on + strand, within PS417_16750at 3653.832 kb on + strand, within PS417_16750at 3654.771 kb on + strand, within PS417_16755at 3654.772 kb on - strand, within PS417_16755at 3654.772 kb on - strand, within PS417_16755at 3654.859 kb on - strand, within PS417_16755at 3654.859 kb on - strand, within PS417_16755at 3654.966 kb on + strand, within PS417_16755at 3654.966 kb on + strand, within PS417_16755at 3654.966 kb on + strand, within PS417_16755at 3654.967 kb on - strand, within PS417_16755at 3654.967 kb on - strand, within PS417_16755

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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3,653,241 + -0.1
3,653,241 + -1.5
3,653,242 - +0.1
3,653,318 - +0.5
3,653,318 - +0.3
3,653,334 - -0.5
3,653,438 + +0.5
3,653,439 - +1.0
3,653,610 + -0.2
3,653,660 - -0.2
3,653,812 + PS417_16750 0.30 -0.7
3,653,832 + PS417_16750 0.33 -0.6
3,654,771 + PS417_16755 0.38 +0.2
3,654,772 - PS417_16755 0.39 +0.3
3,654,772 - PS417_16755 0.39 +0.4
3,654,859 - PS417_16755 0.46 -0.4
3,654,859 - PS417_16755 0.46 -0.3
3,654,966 + PS417_16755 0.54 +0.0
3,654,966 + PS417_16755 0.54 -0.2
3,654,966 + PS417_16755 0.54 +0.0
3,654,967 - PS417_16755 0.55 +0.0
3,654,967 - PS417_16755 0.55 +0.2

Or see this region's nucleotide sequence