Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16165 and PS417_16170 are separated by 22 nucleotides PS417_16170 and PS417_16175 overlap by 34 nucleotides PS417_16175 and PS417_16180 are separated by 225 nucleotides
PS417_16165: PS417_16165 - ABC transporter substrate-binding protein, at 3,544,793 to 3,545,737
_16165
PS417_16170: PS417_16170 - hypothetical protein, at 3,545,760 to 3,546,167
_16170
PS417_16175: PS417_16175 - porin, at 3,546,134 to 3,546,889
_16175
PS417_16180: PS417_16180 - MFS transporter, at 3,547,115 to 3,548,299
_16180
Position (kb)
3545
3546
3547 Strain fitness (log2 ratio)
-1
0
1 at 3544.800 kb on + strand at 3544.800 kb on + strand at 3544.800 kb on + strand at 3544.801 kb on - strand at 3544.801 kb on - strand at 3544.801 kb on - strand at 3545.222 kb on + strand at 3545.420 kb on + strand, within PS417_16165 at 3545.421 kb on - strand, within PS417_16165 at 3545.430 kb on - strand at 3545.432 kb on + strand, within PS417_16165 at 3545.433 kb on - strand, within PS417_16165 at 3545.487 kb on - strand, within PS417_16165 at 3545.548 kb on - strand, within PS417_16165 at 3545.577 kb on + strand, within PS417_16165 at 3545.688 kb on + strand at 3545.688 kb on + strand at 3545.753 kb on - strand at 3545.802 kb on + strand, within PS417_16170 at 3546.152 kb on - strand at 3546.152 kb on - strand at 3546.349 kb on + strand, within PS417_16175 at 3546.350 kb on - strand, within PS417_16175 at 3546.350 kb on - strand, within PS417_16175 at 3546.535 kb on - strand, within PS417_16175 at 3546.591 kb on + strand, within PS417_16175 at 3546.592 kb on - strand, within PS417_16175 at 3546.593 kb on + strand at 3546.640 kb on - strand, within PS417_16175 at 3546.663 kb on - strand, within PS417_16175 at 3546.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol% remove 3,544,800 + +0.5 3,544,800 + +0.0 3,544,800 + +1.3 3,544,801 - -1.2 3,544,801 - -0.6 3,544,801 - -0.1 3,545,222 + +0.4 3,545,420 + PS417_16165 0.66 +0.2 3,545,421 - PS417_16165 0.66 -0.3 3,545,430 - +0.0 3,545,432 + PS417_16165 0.68 +0.3 3,545,433 - PS417_16165 0.68 +0.3 3,545,487 - PS417_16165 0.73 -0.6 3,545,548 - PS417_16165 0.80 -0.0 3,545,577 + PS417_16165 0.83 +0.3 3,545,688 + -0.2 3,545,688 + +0.2 3,545,753 - +0.3 3,545,802 + PS417_16170 0.10 +0.7 3,546,152 - -0.1 3,546,152 - +0.4 3,546,349 + PS417_16175 0.28 +1.5 3,546,350 - PS417_16175 0.29 +0.7 3,546,350 - PS417_16175 0.29 -0.0 3,546,535 - PS417_16175 0.53 +0.7 3,546,591 + PS417_16175 0.60 -0.3 3,546,592 - PS417_16175 0.61 +0.3 3,546,593 + +0.8 3,546,640 - PS417_16175 0.67 -0.3 3,546,663 - PS417_16175 0.70 +0.2 3,546,977 - -0.4
Or see this region's nucleotide sequence