Strain Fitness in Pseudomonas simiae WCS417 around PS417_15885

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15875 and PS417_15880 are separated by 207 nucleotidesPS417_15880 and PS417_15885 are separated by 2 nucleotidesPS417_15885 and PS417_15890 are separated by 234 nucleotidesPS417_15890 and PS417_15895 overlap by 4 nucleotides PS417_15875: PS417_15875 - LuxR family transcriptional regulator, at 3,477,324 to 3,477,926 _15875 PS417_15880: PS417_15880 - GNAT family acetyltransferase, at 3,478,134 to 3,478,625 _15880 PS417_15885: PS417_15885 - GCN5 family acetyltransferase, at 3,478,628 to 3,479,053 _15885 PS417_15890: PS417_15890 - RNA polymerase sigma factor, at 3,479,288 to 3,479,818 _15890 PS417_15895: PS417_15895 - iron dicitrate transport regulator FecR, at 3,479,815 to 3,480,765 _15895 Position (kb) 3478 3479 3480Strain fitness (log2 ratio) -3 -2 -1 0 1at 3477.741 kb on + strand, within PS417_15875at 3477.742 kb on - strand, within PS417_15875at 3477.836 kb on + strand, within PS417_15875at 3477.979 kb on - strandat 3478.096 kb on + strandat 3478.206 kb on + strandat 3478.206 kb on + strand, within PS417_15880at 3478.540 kb on - strand, within PS417_15880at 3478.560 kb on + strand, within PS417_15880at 3478.560 kb on + strand, within PS417_15880at 3478.560 kb on + strandat 3478.561 kb on - strand, within PS417_15880at 3478.561 kb on - strand, within PS417_15880at 3478.636 kb on - strandat 3478.636 kb on - strandat 3478.813 kb on - strand, within PS417_15885at 3478.937 kb on + strand, within PS417_15885at 3478.967 kb on + strand, within PS417_15885at 3479.042 kb on - strandat 3479.116 kb on + strandat 3479.685 kb on + strand, within PS417_15890at 3479.686 kb on - strand, within PS417_15890at 3479.751 kb on - strandat 3479.751 kb on - strand, within PS417_15890at 3479.868 kb on + strandat 3479.869 kb on + strandat 3479.869 kb on + strandat 3479.870 kb on - strandat 3479.870 kb on - strandat 3479.962 kb on + strand, within PS417_15895at 3479.963 kb on - strand, within PS417_15895

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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3,477,741 + PS417_15875 0.69 -0.1
3,477,742 - PS417_15875 0.69 +0.2
3,477,836 + PS417_15875 0.85 +1.5
3,477,979 - +0.3
3,478,096 + +1.4
3,478,206 + -0.9
3,478,206 + PS417_15880 0.15 -0.8
3,478,540 - PS417_15880 0.83 -1.9
3,478,560 + PS417_15880 0.87 +0.3
3,478,560 + PS417_15880 0.87 -0.9
3,478,560 + +1.0
3,478,561 - PS417_15880 0.87 -0.9
3,478,561 - PS417_15880 0.87 +0.2
3,478,636 - -0.8
3,478,636 - +0.7
3,478,813 - PS417_15885 0.43 +0.2
3,478,937 + PS417_15885 0.73 -0.8
3,478,967 + PS417_15885 0.80 -1.7
3,479,042 - +0.0
3,479,116 + -0.2
3,479,685 + PS417_15890 0.75 +0.3
3,479,686 - PS417_15890 0.75 -0.3
3,479,751 - +1.4
3,479,751 - PS417_15890 0.87 -1.2
3,479,868 + +0.8
3,479,869 + +0.6
3,479,869 + -0.4
3,479,870 - +0.1
3,479,870 - +0.0
3,479,962 + PS417_15895 0.15 -2.8
3,479,963 - PS417_15895 0.16 +0.8

Or see this region's nucleotide sequence