Strain Fitness in Pseudomonas simiae WCS417 around PS417_01500

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01490 and PS417_01495 are separated by 74 nucleotidesPS417_01495 and PS417_01500 are separated by 13 nucleotidesPS417_01500 and PS417_01505 are separated by 554 nucleotides PS417_01490: PS417_01490 - ABC transporter permease, at 330,843 to 331,538 _01490 PS417_01495: PS417_01495 - amino acid ABC transporter, at 331,613 to 332,365 _01495 PS417_01500: PS417_01500 - amino acid transporter, at 332,379 to 333,152 _01500 PS417_01505: PS417_01505 - gamma-aminobutyrate transporter, at 333,707 to 335,098 _01505 Position (kb) 332 333 334Strain fitness (log2 ratio) -1 0 1 2at 331.405 kb on + strand, within PS417_01490at 331.406 kb on - strand, within PS417_01490at 331.441 kb on - strand, within PS417_01490at 331.635 kb on + strandat 331.635 kb on + strandat 331.635 kb on + strandat 331.636 kb on - strandat 331.636 kb on - strandat 331.656 kb on + strandat 331.656 kb on + strandat 331.657 kb on - strandat 331.752 kb on - strand, within PS417_01495at 331.809 kb on + strand, within PS417_01495at 331.818 kb on + strand, within PS417_01495at 331.818 kb on + strand, within PS417_01495at 331.818 kb on + strand, within PS417_01495at 331.818 kb on + strand, within PS417_01495at 331.819 kb on - strand, within PS417_01495at 331.819 kb on - strand, within PS417_01495at 331.819 kb on - strand, within PS417_01495at 331.926 kb on + strand, within PS417_01495at 331.926 kb on + strand, within PS417_01495at 331.927 kb on - strandat 331.927 kb on - strand, within PS417_01495at 332.041 kb on - strand, within PS417_01495at 332.041 kb on - strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.161 kb on - strand, within PS417_01495at 332.161 kb on - strand, within PS417_01495at 332.161 kb on - strand, within PS417_01495at 332.161 kb on - strand, within PS417_01495at 332.488 kb on + strand, within PS417_01500at 332.573 kb on + strand, within PS417_01500at 332.573 kb on + strand, within PS417_01500at 332.573 kb on + strand, within PS417_01500at 332.574 kb on - strand, within PS417_01500at 332.574 kb on - strand, within PS417_01500at 332.574 kb on - strand, within PS417_01500at 332.636 kb on + strand, within PS417_01500at 332.637 kb on - strand, within PS417_01500at 333.077 kb on + strandat 333.087 kb on + strandat 333.103 kb on + strandat 333.104 kb on - strandat 333.218 kb on + strandat 333.218 kb on + strandat 333.219 kb on - strandat 333.219 kb on - strandat 333.219 kb on - strandat 333.219 kb on - strandat 333.219 kb on - strandat 333.219 kb on - strandat 333.223 kb on + strandat 333.223 kb on + strandat 333.224 kb on - strandat 333.224 kb on - strandat 333.224 kb on - strandat 333.427 kb on - strandat 333.427 kb on - strandat 333.513 kb on + strandat 333.513 kb on + strandat 333.712 kb on + strandat 333.712 kb on + strandat 333.715 kb on + strandat 333.715 kb on + strandat 333.716 kb on - strandat 333.716 kb on - strandat 333.716 kb on - strandat 333.947 kb on + strand, within PS417_01505at 333.948 kb on - strand, within PS417_01505at 333.948 kb on - strand, within PS417_01505at 333.948 kb on - strand, within PS417_01505at 333.948 kb on - strand, within PS417_01505at 333.998 kb on + strand, within PS417_01505at 333.998 kb on + strand, within PS417_01505at 333.999 kb on - strand, within PS417_01505at 333.999 kb on - strand, within PS417_01505at 334.105 kb on + strand, within PS417_01505

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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331,405 + PS417_01490 0.81 -0.6
331,406 - PS417_01490 0.81 -0.2
331,441 - PS417_01490 0.86 -0.5
331,635 + +0.6
331,635 + +0.0
331,635 + +0.1
331,636 - +1.4
331,636 - -0.2
331,656 + -0.2
331,656 + +0.1
331,657 - +0.6
331,752 - PS417_01495 0.18 +0.3
331,809 + PS417_01495 0.26 -0.1
331,818 + PS417_01495 0.27 -1.1
331,818 + PS417_01495 0.27 -0.4
331,818 + PS417_01495 0.27 +0.4
331,818 + PS417_01495 0.27 +0.2
331,819 - PS417_01495 0.27 +0.4
331,819 - PS417_01495 0.27 -0.4
331,819 - PS417_01495 0.27 +1.8
331,926 + PS417_01495 0.42 +0.4
331,926 + PS417_01495 0.42 +1.5
331,927 - -0.4
331,927 - PS417_01495 0.42 +1.0
332,041 - PS417_01495 0.57 +0.7
332,041 - PS417_01495 0.57 -0.1
332,160 + PS417_01495 0.73 +0.1
332,160 + PS417_01495 0.73 -0.1
332,160 + PS417_01495 0.73 +0.5
332,160 + PS417_01495 0.73 -0.2
332,160 + PS417_01495 0.73 -0.2
332,161 - PS417_01495 0.73 -0.2
332,161 - PS417_01495 0.73 +0.4
332,161 - PS417_01495 0.73 +0.7
332,161 - PS417_01495 0.73 +0.0
332,488 + PS417_01500 0.14 +0.1
332,573 + PS417_01500 0.25 +0.9
332,573 + PS417_01500 0.25 -0.1
332,573 + PS417_01500 0.25 +0.6
332,574 - PS417_01500 0.25 +0.0
332,574 - PS417_01500 0.25 +0.3
332,574 - PS417_01500 0.25 -0.1
332,636 + PS417_01500 0.33 +0.0
332,637 - PS417_01500 0.33 -0.2
333,077 + -1.6
333,087 + -0.8
333,103 + +0.4
333,104 - +0.0
333,218 + +0.3
333,218 + -0.0
333,219 - +0.3
333,219 - +0.2
333,219 - -0.9
333,219 - +2.1
333,219 - +1.0
333,219 - -0.9
333,223 + -0.0
333,223 + -1.3
333,224 - -0.6
333,224 - -0.3
333,224 - +0.2
333,427 - +0.1
333,427 - -0.2
333,513 + -0.3
333,513 + -0.3
333,712 + +0.2
333,712 + -0.1
333,715 + +0.2
333,715 + +0.1
333,716 - +0.8
333,716 - +0.9
333,716 - -0.3
333,947 + PS417_01505 0.17 +0.3
333,948 - PS417_01505 0.17 -0.2
333,948 - PS417_01505 0.17 -0.1
333,948 - PS417_01505 0.17 +1.8
333,948 - PS417_01505 0.17 +0.2
333,998 + PS417_01505 0.21 -0.7
333,998 + PS417_01505 0.21 +0.1
333,999 - PS417_01505 0.21 +0.6
333,999 - PS417_01505 0.21 -0.2
334,105 + PS417_01505 0.29 +0.1

Or see this region's nucleotide sequence