Strain Fitness in Pseudomonas simiae WCS417 around PS417_14045

Experiment: 2-Furfuraldehyde 0.06 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_14040 and PS417_14045 are separated by 127 nucleotidesPS417_14045 and PS417_14050 are separated by 143 nucleotides PS417_14040: PS417_14040 - alkyl hydroperoxide reductase, at 3,083,501 to 3,085,066 _14040 PS417_14045: PS417_14045 - alkyl hydroperoxide reductase, at 3,085,194 to 3,085,757 _14045 PS417_14050: PS417_14050 - recombinase, at 3,085,901 to 3,086,827 _14050 Position (kb) 3085 3086Strain fitness (log2 ratio) -1 0 1 2at 3084.239 kb on + strandat 3084.240 kb on - strandat 3084.240 kb on - strand, within PS417_14040at 3084.370 kb on + strand, within PS417_14040at 3084.382 kb on - strand, within PS417_14040at 3084.700 kb on - strand, within PS417_14040at 3084.700 kb on - strand, within PS417_14040at 3085.030 kb on - strandat 3085.048 kb on + strandat 3085.048 kb on + strandat 3085.049 kb on - strandat 3085.067 kb on - strandat 3085.094 kb on - strandat 3085.156 kb on - strandat 3085.232 kb on + strandat 3085.233 kb on - strandat 3085.289 kb on - strand, within PS417_14045at 3085.289 kb on - strand, within PS417_14045at 3085.394 kb on + strand, within PS417_14045at 3085.477 kb on + strandat 3085.478 kb on - strand, within PS417_14045at 3085.585 kb on + strand, within PS417_14045at 3085.585 kb on + strand, within PS417_14045at 3085.643 kb on - strand, within PS417_14045at 3085.693 kb on - strand, within PS417_14045at 3085.711 kb on + strandat 3085.734 kb on + strandat 3085.781 kb on + strandat 3085.782 kb on - strandat 3085.791 kb on + strandat 3085.888 kb on - strandat 3085.992 kb on + strandat 3086.070 kb on + strand, within PS417_14050at 3086.268 kb on + strand, within PS417_14050at 3086.269 kb on - strand, within PS417_14050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
remove
3,084,239 + +1.3
3,084,240 - -0.7
3,084,240 - PS417_14040 0.47 -0.3
3,084,370 + PS417_14040 0.55 +0.7
3,084,382 - PS417_14040 0.56 +0.6
3,084,700 - PS417_14040 0.77 -0.2
3,084,700 - PS417_14040 0.77 +0.0
3,085,030 - +0.2
3,085,048 + +0.3
3,085,048 + -0.1
3,085,049 - -0.2
3,085,067 - -0.9
3,085,094 - -0.7
3,085,156 - -0.5
3,085,232 + -0.3
3,085,233 - +1.3
3,085,289 - PS417_14045 0.17 -1.1
3,085,289 - PS417_14045 0.17 -1.3
3,085,394 + PS417_14045 0.35 -0.8
3,085,477 + +2.3
3,085,478 - PS417_14045 0.50 -1.0
3,085,585 + PS417_14045 0.69 -0.1
3,085,585 + PS417_14045 0.69 +1.5
3,085,643 - PS417_14045 0.80 -0.0
3,085,693 - PS417_14045 0.88 -0.7
3,085,711 + -0.6
3,085,734 + +0.6
3,085,781 + -0.4
3,085,782 - +0.1
3,085,791 + +0.3
3,085,888 - -1.3
3,085,992 + +0.1
3,086,070 + PS417_14050 0.18 -0.0
3,086,268 + PS417_14050 0.40 -0.2
3,086,269 - PS417_14050 0.40 -0.1

Or see this region's nucleotide sequence