Strain Fitness in Pseudomonas simiae WCS417 around PS417_13375

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13370 and PS417_13375 are separated by 488 nucleotidesPS417_13375 and PS417_13380 are separated by 247 nucleotides PS417_13370: PS417_13370 - short-chain dehydrogenase, at 2,938,509 to 2,939,342 _13370 PS417_13375: PS417_13375 - LysR family transcriptional regulator, at 2,939,831 to 2,940,745 _13375 PS417_13380: PS417_13380 - alcohol dehydrogenase, at 2,940,993 to 2,942,015 _13380 Position (kb) 2939 2940 2941Strain fitness (log2 ratio) -2 -1 0 1 2at 2938.856 kb on + strand, within PS417_13370at 2938.894 kb on + strand, within PS417_13370at 2938.897 kb on + strand, within PS417_13370at 2938.897 kb on + strand, within PS417_13370at 2938.898 kb on - strand, within PS417_13370at 2938.905 kb on - strand, within PS417_13370at 2938.919 kb on + strand, within PS417_13370at 2938.920 kb on - strand, within PS417_13370at 2938.921 kb on + strand, within PS417_13370at 2938.922 kb on - strand, within PS417_13370at 2938.922 kb on - strand, within PS417_13370at 2938.922 kb on - strand, within PS417_13370at 2938.922 kb on - strand, within PS417_13370at 2938.941 kb on - strand, within PS417_13370at 2938.950 kb on - strand, within PS417_13370at 2938.950 kb on - strand, within PS417_13370at 2939.013 kb on + strand, within PS417_13370at 2939.013 kb on + strand, within PS417_13370at 2939.013 kb on + strand, within PS417_13370at 2939.116 kb on + strand, within PS417_13370at 2939.304 kb on - strandat 2939.359 kb on + strandat 2939.360 kb on - strandat 2939.361 kb on + strandat 2939.361 kb on + strandat 2939.362 kb on - strandat 2939.362 kb on - strandat 2939.363 kb on + strandat 2939.363 kb on + strandat 2939.363 kb on + strandat 2939.363 kb on + strandat 2939.364 kb on - strandat 2939.364 kb on - strandat 2939.364 kb on - strandat 2939.364 kb on - strandat 2939.374 kb on + strandat 2939.380 kb on - strandat 2939.402 kb on + strandat 2939.403 kb on - strandat 2939.419 kb on + strandat 2939.420 kb on - strandat 2939.420 kb on - strandat 2939.436 kb on - strandat 2939.509 kb on - strandat 2939.509 kb on - strandat 2939.513 kb on - strandat 2939.682 kb on + strandat 2939.701 kb on + strandat 2939.701 kb on + strandat 2939.809 kb on + strandat 2939.923 kb on + strand, within PS417_13375at 2939.924 kb on - strand, within PS417_13375at 2939.924 kb on - strand, within PS417_13375at 2939.924 kb on - strand, within PS417_13375at 2940.080 kb on + strand, within PS417_13375at 2940.080 kb on + strand, within PS417_13375at 2940.080 kb on + strand, within PS417_13375at 2940.080 kb on + strand, within PS417_13375at 2940.080 kb on + strand, within PS417_13375at 2940.081 kb on - strand, within PS417_13375at 2940.280 kb on - strand, within PS417_13375at 2940.333 kb on + strand, within PS417_13375at 2940.334 kb on - strand, within PS417_13375at 2940.334 kb on - strand, within PS417_13375at 2940.347 kb on + strand, within PS417_13375at 2940.348 kb on - strand, within PS417_13375at 2940.348 kb on - strand, within PS417_13375at 2940.351 kb on - strand, within PS417_13375at 2940.499 kb on + strand, within PS417_13375at 2940.499 kb on + strand, within PS417_13375at 2940.500 kb on - strand, within PS417_13375at 2940.698 kb on + strandat 2940.713 kb on - strandat 2940.788 kb on + strandat 2940.788 kb on + strandat 2940.789 kb on - strandat 2940.789 kb on - strandat 2940.792 kb on + strandat 2940.792 kb on + strandat 2940.793 kb on - strandat 2940.845 kb on + strandat 2940.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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2,938,856 + PS417_13370 0.42 -0.4
2,938,894 + PS417_13370 0.46 -0.1
2,938,897 + PS417_13370 0.47 +0.3
2,938,897 + PS417_13370 0.47 +0.6
2,938,898 - PS417_13370 0.47 -0.0
2,938,905 - PS417_13370 0.47 +0.5
2,938,919 + PS417_13370 0.49 +0.2
2,938,920 - PS417_13370 0.49 -0.1
2,938,921 + PS417_13370 0.49 -1.1
2,938,922 - PS417_13370 0.50 -1.3
2,938,922 - PS417_13370 0.50 -0.3
2,938,922 - PS417_13370 0.50 -0.0
2,938,922 - PS417_13370 0.50 +1.7
2,938,941 - PS417_13370 0.52 -0.4
2,938,950 - PS417_13370 0.53 -0.0
2,938,950 - PS417_13370 0.53 -0.3
2,939,013 + PS417_13370 0.60 +0.1
2,939,013 + PS417_13370 0.60 +0.3
2,939,013 + PS417_13370 0.60 -0.2
2,939,116 + PS417_13370 0.73 -0.0
2,939,304 - -0.7
2,939,359 + -1.4
2,939,360 - +0.1
2,939,361 + -0.4
2,939,361 + -0.2
2,939,362 - -0.2
2,939,362 - -0.2
2,939,363 + -1.3
2,939,363 + +0.1
2,939,363 + -0.0
2,939,363 + -0.1
2,939,364 - -0.2
2,939,364 - +0.6
2,939,364 - +0.1
2,939,364 - +0.3
2,939,374 + +0.5
2,939,380 - -0.2
2,939,402 + +0.5
2,939,403 - -0.4
2,939,419 + -1.9
2,939,420 - -0.1
2,939,420 - -0.3
2,939,436 - +0.8
2,939,509 - -1.3
2,939,509 - +0.4
2,939,513 - -1.1
2,939,682 + -0.1
2,939,701 + +0.3
2,939,701 + +0.1
2,939,809 + -0.1
2,939,923 + PS417_13375 0.10 +1.6
2,939,924 - PS417_13375 0.10 +1.5
2,939,924 - PS417_13375 0.10 +1.3
2,939,924 - PS417_13375 0.10 +1.8
2,940,080 + PS417_13375 0.27 +2.1
2,940,080 + PS417_13375 0.27 +1.3
2,940,080 + PS417_13375 0.27 +2.6
2,940,080 + PS417_13375 0.27 +0.8
2,940,080 + PS417_13375 0.27 +1.9
2,940,081 - PS417_13375 0.27 +0.1
2,940,280 - PS417_13375 0.49 +2.0
2,940,333 + PS417_13375 0.55 +1.0
2,940,334 - PS417_13375 0.55 +1.4
2,940,334 - PS417_13375 0.55 +2.6
2,940,347 + PS417_13375 0.56 +1.4
2,940,348 - PS417_13375 0.57 +1.4
2,940,348 - PS417_13375 0.57 +1.4
2,940,351 - PS417_13375 0.57 +1.3
2,940,499 + PS417_13375 0.73 +2.0
2,940,499 + PS417_13375 0.73 +2.0
2,940,500 - PS417_13375 0.73 +1.0
2,940,698 + +1.6
2,940,713 - +1.1
2,940,788 + +2.1
2,940,788 + +2.6
2,940,789 - +0.3
2,940,789 - +0.5
2,940,792 + +1.6
2,940,792 + +1.2
2,940,793 - -0.2
2,940,845 + +1.2
2,940,916 + +0.8

Or see this region's nucleotide sequence