Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11465 and PS417_11470 are separated by 118 nucleotides PS417_11470 and PS417_11475 are separated by 4 nucleotides PS417_11475 and PS417_11480 are separated by 289 nucleotides PS417_11480 and PS417_11485 are separated by 146 nucleotides
PS417_11465: PS417_11465 - LysR family transcriptional regulator, at 2,468,387 to 2,469,319
_11465
PS417_11470: PS417_11470 - membrane protein, at 2,469,438 to 2,469,926
_11470
PS417_11475: PS417_11475 - membrane protein, at 2,469,931 to 2,470,383
_11475
PS417_11480: PS417_11480 - hypothetical protein, at 2,470,673 to 2,470,945
_11480
PS417_11485: PS417_11485 - AraC family transcriptional regulator, at 2,471,092 to 2,471,856
_11485
Position (kb)
2469
2470
2471 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2468.933 kb on - strand, within PS417_11465 at 2469.257 kb on + strand at 2469.437 kb on + strand at 2469.437 kb on + strand at 2469.438 kb on - strand at 2469.438 kb on - strand at 2469.438 kb on - strand at 2469.726 kb on + strand, within PS417_11470 at 2469.727 kb on - strand, within PS417_11470 at 2469.727 kb on - strand, within PS417_11470 at 2469.727 kb on - strand, within PS417_11470 at 2470.168 kb on + strand, within PS417_11475 at 2470.168 kb on + strand, within PS417_11475 at 2470.169 kb on - strand, within PS417_11475 at 2470.169 kb on - strand, within PS417_11475 at 2470.675 kb on - strand at 2470.703 kb on - strand, within PS417_11480 at 2470.730 kb on + strand at 2470.731 kb on - strand, within PS417_11480 at 2470.788 kb on - strand, within PS417_11480 at 2470.902 kb on + strand, within PS417_11480 at 2470.998 kb on + strand at 2470.999 kb on - strand at 2471.057 kb on - strand at 2471.159 kb on - strand at 2471.173 kb on + strand, within PS417_11485 at 2471.347 kb on + strand, within PS417_11485 at 2471.347 kb on + strand, within PS417_11485
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol% remove 2,468,933 - PS417_11465 0.59 -0.6 2,469,257 + -0.3 2,469,437 + -0.3 2,469,437 + +0.8 2,469,438 - +0.0 2,469,438 - -1.3 2,469,438 - +0.5 2,469,726 + PS417_11470 0.59 +0.1 2,469,727 - PS417_11470 0.59 +0.3 2,469,727 - PS417_11470 0.59 +0.3 2,469,727 - PS417_11470 0.59 +1.3 2,470,168 + PS417_11475 0.52 -0.2 2,470,168 + PS417_11475 0.52 -1.3 2,470,169 - PS417_11475 0.53 +0.4 2,470,169 - PS417_11475 0.53 -2.3 2,470,675 - -0.1 2,470,703 - PS417_11480 0.11 -0.1 2,470,730 + -1.1 2,470,731 - PS417_11480 0.21 -0.5 2,470,788 - PS417_11480 0.42 -0.5 2,470,902 + PS417_11480 0.84 +0.3 2,470,998 + +1.8 2,470,999 - -0.1 2,471,057 - +0.7 2,471,159 - -0.5 2,471,173 + PS417_11485 0.11 -0.6 2,471,347 + PS417_11485 0.33 -0.5 2,471,347 + PS417_11485 0.33 +0.6
Or see this region's nucleotide sequence