Strain Fitness in Pseudomonas simiae WCS417 around PS417_10890

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10885 and PS417_10890 overlap by 1 nucleotidesPS417_10890 and PS417_10895 are separated by 151 nucleotides PS417_10885: PS417_10885 - Deoxyribose 1-dehydrogenase, beta subunit (from data), at 2,326,573 to 2,328,792 _10885 PS417_10890: PS417_10890 - Deoxyribose 1-dehydrogenase, alpha subunit (from data), at 2,328,792 to 2,329,247 _10890 PS417_10895: PS417_10895 - AMP-dependent synthetase, at 2,329,399 to 2,331,099 _10895 Position (kb) 2328 2329 2330Strain fitness (log2 ratio) -2 -1 0 1at 2328.125 kb on + strand, within PS417_10885at 2328.470 kb on + strand, within PS417_10885at 2328.470 kb on + strand, within PS417_10885at 2328.470 kb on + strand, within PS417_10885at 2328.471 kb on - strand, within PS417_10885at 2328.726 kb on + strandat 2328.844 kb on + strand, within PS417_10890at 2328.844 kb on + strand, within PS417_10890at 2328.844 kb on + strand, within PS417_10890at 2328.844 kb on + strand, within PS417_10890at 2328.844 kb on + strandat 2328.844 kb on + strand, within PS417_10890at 2328.844 kb on + strand, within PS417_10890at 2328.845 kb on - strand, within PS417_10890at 2328.845 kb on - strand, within PS417_10890at 2328.845 kb on - strand, within PS417_10890at 2329.144 kb on + strand, within PS417_10890at 2329.145 kb on - strand, within PS417_10890at 2329.145 kb on - strand, within PS417_10890at 2329.219 kb on + strandat 2329.239 kb on + strandat 2329.240 kb on - strandat 2329.340 kb on + strandat 2329.340 kb on + strandat 2329.344 kb on + strandat 2329.345 kb on - strandat 2329.380 kb on - strandat 2329.811 kb on + strand, within PS417_10895at 2329.995 kb on - strand, within PS417_10895at 2330.189 kb on + strand, within PS417_10895

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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2,328,125 + PS417_10885 0.70 -2.1
2,328,470 + PS417_10885 0.85 -0.1
2,328,470 + PS417_10885 0.85 -1.0
2,328,470 + PS417_10885 0.85 -1.2
2,328,471 - PS417_10885 0.85 -1.0
2,328,726 + -0.3
2,328,844 + PS417_10890 0.11 -1.5
2,328,844 + PS417_10890 0.11 -1.3
2,328,844 + PS417_10890 0.11 -0.6
2,328,844 + PS417_10890 0.11 -0.6
2,328,844 + +0.5
2,328,844 + PS417_10890 0.11 -0.4
2,328,844 + PS417_10890 0.11 -0.8
2,328,845 - PS417_10890 0.12 -2.3
2,328,845 - PS417_10890 0.12 -0.6
2,328,845 - PS417_10890 0.12 -1.0
2,329,144 + PS417_10890 0.77 -1.2
2,329,145 - PS417_10890 0.77 -1.7
2,329,145 - PS417_10890 0.77 -1.2
2,329,219 + -1.0
2,329,239 + -0.2
2,329,240 - -0.7
2,329,340 + -0.3
2,329,340 + +0.8
2,329,344 + -0.8
2,329,345 - -0.7
2,329,380 - -0.8
2,329,811 + PS417_10895 0.24 +0.0
2,329,995 - PS417_10895 0.35 +0.4
2,330,189 + PS417_10895 0.46 +0.6

Or see this region's nucleotide sequence