Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10885 and PS417_10890 overlap by 1 nucleotides PS417_10890 and PS417_10895 are separated by 151 nucleotides
PS417_10885: PS417_10885 - Deoxyribose 1-dehydrogenase, beta subunit (from data) , at 2,326,573 to 2,328,792
_10885
PS417_10890: PS417_10890 - Deoxyribose 1-dehydrogenase, alpha subunit (from data) , at 2,328,792 to 2,329,247
_10890
PS417_10895: PS417_10895 - AMP-dependent synthetase, at 2,329,399 to 2,331,099
_10895
Position (kb)
2328
2329
2330 Strain fitness (log2 ratio)
-2
-1
0
1 at 2328.125 kb on + strand, within PS417_10885 at 2328.470 kb on + strand, within PS417_10885 at 2328.470 kb on + strand, within PS417_10885 at 2328.470 kb on + strand, within PS417_10885 at 2328.471 kb on - strand, within PS417_10885 at 2328.726 kb on + strand at 2328.844 kb on + strand, within PS417_10890 at 2328.844 kb on + strand, within PS417_10890 at 2328.844 kb on + strand, within PS417_10890 at 2328.844 kb on + strand, within PS417_10890 at 2328.844 kb on + strand at 2328.844 kb on + strand, within PS417_10890 at 2328.844 kb on + strand, within PS417_10890 at 2328.845 kb on - strand, within PS417_10890 at 2328.845 kb on - strand, within PS417_10890 at 2328.845 kb on - strand, within PS417_10890 at 2329.144 kb on + strand, within PS417_10890 at 2329.145 kb on - strand, within PS417_10890 at 2329.145 kb on - strand, within PS417_10890 at 2329.219 kb on + strand at 2329.239 kb on + strand at 2329.240 kb on - strand at 2329.340 kb on + strand at 2329.340 kb on + strand at 2329.344 kb on + strand at 2329.345 kb on - strand at 2329.380 kb on - strand at 2329.811 kb on + strand, within PS417_10895 at 2329.995 kb on - strand, within PS417_10895 at 2330.189 kb on + strand, within PS417_10895
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol% remove 2,328,125 + PS417_10885 0.70 -2.1 2,328,470 + PS417_10885 0.85 -0.1 2,328,470 + PS417_10885 0.85 -1.0 2,328,470 + PS417_10885 0.85 -1.2 2,328,471 - PS417_10885 0.85 -1.0 2,328,726 + -0.3 2,328,844 + PS417_10890 0.11 -1.5 2,328,844 + PS417_10890 0.11 -1.3 2,328,844 + PS417_10890 0.11 -0.6 2,328,844 + PS417_10890 0.11 -0.6 2,328,844 + +0.5 2,328,844 + PS417_10890 0.11 -0.4 2,328,844 + PS417_10890 0.11 -0.8 2,328,845 - PS417_10890 0.12 -2.3 2,328,845 - PS417_10890 0.12 -0.6 2,328,845 - PS417_10890 0.12 -1.0 2,329,144 + PS417_10890 0.77 -1.2 2,329,145 - PS417_10890 0.77 -1.7 2,329,145 - PS417_10890 0.77 -1.2 2,329,219 + -1.0 2,329,239 + -0.2 2,329,240 - -0.7 2,329,340 + -0.3 2,329,340 + +0.8 2,329,344 + -0.8 2,329,345 - -0.7 2,329,380 - -0.8 2,329,811 + PS417_10895 0.24 +0.0 2,329,995 - PS417_10895 0.35 +0.4 2,330,189 + PS417_10895 0.46 +0.6
Or see this region's nucleotide sequence