Strain Fitness in Pseudomonas simiae WCS417 around PS417_10890
Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.06 vol% |
---|---|---|---|---|---|
remove | |||||
2,328,125 | + | PS417_10885 | 0.70 | -2.1 | |
2,328,470 | + | PS417_10885 | 0.85 | -0.1 | |
2,328,470 | + | PS417_10885 | 0.85 | -1.0 | |
2,328,470 | + | PS417_10885 | 0.85 | -1.2 | |
2,328,471 | - | PS417_10885 | 0.85 | -1.0 | |
2,328,726 | + | -0.3 | |||
2,328,844 | + | PS417_10890 | 0.11 | -1.5 | |
2,328,844 | + | PS417_10890 | 0.11 | -1.3 | |
2,328,844 | + | PS417_10890 | 0.11 | -0.6 | |
2,328,844 | + | PS417_10890 | 0.11 | -0.6 | |
2,328,844 | + | +0.5 | |||
2,328,844 | + | PS417_10890 | 0.11 | -0.4 | |
2,328,844 | + | PS417_10890 | 0.11 | -0.8 | |
2,328,845 | - | PS417_10890 | 0.12 | -2.3 | |
2,328,845 | - | PS417_10890 | 0.12 | -0.6 | |
2,328,845 | - | PS417_10890 | 0.12 | -1.0 | |
2,329,144 | + | PS417_10890 | 0.77 | -1.2 | |
2,329,145 | - | PS417_10890 | 0.77 | -1.7 | |
2,329,145 | - | PS417_10890 | 0.77 | -1.2 | |
2,329,219 | + | -1.0 | |||
2,329,239 | + | -0.2 | |||
2,329,240 | - | -0.7 | |||
2,329,340 | + | -0.3 | |||
2,329,340 | + | +0.8 | |||
2,329,344 | + | -0.8 | |||
2,329,345 | - | -0.7 | |||
2,329,380 | - | -0.8 | |||
2,329,811 | + | PS417_10895 | 0.24 | +0.0 | |
2,329,995 | - | PS417_10895 | 0.35 | +0.4 | |
2,330,189 | + | PS417_10895 | 0.46 | +0.6 |
Or see this region's nucleotide sequence