Strain Fitness in Pseudomonas simiae WCS417 around PS417_10880

Experiment: 2-Furfuraldehyde 0.06 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10875 and PS417_10880 are separated by 2 nucleotidesPS417_10880 and PS417_10885 are separated by 16 nucleotides PS417_10875: PS417_10875 - AraC family transcriptional regulator, at 2,324,134 to 2,325,210 _10875 PS417_10880: PS417_10880 - cytochrome c component of deoxyribose dehydrogenase (from data), at 2,325,213 to 2,326,556 _10880 PS417_10885: PS417_10885 - Deoxyribose 1-dehydrogenase, beta subunit (from data), at 2,326,573 to 2,328,792 _10885 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2324.507 kb on - strand, within PS417_10875at 2324.507 kb on - strand, within PS417_10875at 2324.851 kb on + strand, within PS417_10875at 2324.896 kb on + strand, within PS417_10875at 2324.921 kb on - strand, within PS417_10875at 2324.921 kb on - strand, within PS417_10875at 2324.924 kb on - strand, within PS417_10875at 2325.152 kb on + strandat 2325.152 kb on + strandat 2325.152 kb on + strandat 2325.153 kb on - strandat 2325.153 kb on - strandat 2325.320 kb on + strandat 2325.556 kb on + strand, within PS417_10880at 2325.556 kb on + strand, within PS417_10880at 2325.556 kb on + strand, within PS417_10880at 2325.557 kb on - strand, within PS417_10880at 2326.000 kb on + strand, within PS417_10880at 2326.070 kb on + strand, within PS417_10880at 2326.070 kb on + strand, within PS417_10880at 2326.071 kb on - strand, within PS417_10880at 2326.105 kb on - strand, within PS417_10880at 2326.137 kb on + strand, within PS417_10880at 2326.137 kb on + strand, within PS417_10880at 2326.138 kb on - strand, within PS417_10880at 2326.249 kb on + strand, within PS417_10880at 2326.249 kb on + strand, within PS417_10880at 2326.393 kb on + strand, within PS417_10880at 2326.478 kb on - strandat 2326.478 kb on - strandat 2326.766 kb on + strandat 2326.796 kb on + strand, within PS417_10885at 2326.797 kb on - strand, within PS417_10885at 2326.797 kb on - strand, within PS417_10885at 2326.814 kb on - strand, within PS417_10885at 2327.238 kb on - strand, within PS417_10885at 2327.438 kb on - strand, within PS417_10885at 2327.540 kb on + strand, within PS417_10885

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol%
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2,324,507 - PS417_10875 0.35 +0.1
2,324,507 - PS417_10875 0.35 +0.1
2,324,851 + PS417_10875 0.67 -0.4
2,324,896 + PS417_10875 0.71 +0.3
2,324,921 - PS417_10875 0.73 +0.3
2,324,921 - PS417_10875 0.73 -0.7
2,324,924 - PS417_10875 0.73 +0.0
2,325,152 + -3.9
2,325,152 + +0.5
2,325,152 + -0.3
2,325,153 - -0.1
2,325,153 - -0.1
2,325,320 + -0.1
2,325,556 + PS417_10880 0.26 -0.3
2,325,556 + PS417_10880 0.26 -1.3
2,325,556 + PS417_10880 0.26 -0.5
2,325,557 - PS417_10880 0.26 -1.5
2,326,000 + PS417_10880 0.59 -0.1
2,326,070 + PS417_10880 0.64 -1.6
2,326,070 + PS417_10880 0.64 -0.9
2,326,071 - PS417_10880 0.64 -0.2
2,326,105 - PS417_10880 0.66 -0.9
2,326,137 + PS417_10880 0.69 -0.5
2,326,137 + PS417_10880 0.69 -1.2
2,326,138 - PS417_10880 0.69 -0.1
2,326,249 + PS417_10880 0.77 -0.7
2,326,249 + PS417_10880 0.77 +0.0
2,326,393 + PS417_10880 0.88 +0.5
2,326,478 - -0.2
2,326,478 - -0.5
2,326,766 + -1.3
2,326,796 + PS417_10885 0.10 -0.5
2,326,797 - PS417_10885 0.10 -0.9
2,326,797 - PS417_10885 0.10 -1.5
2,326,814 - PS417_10885 0.11 -1.8
2,327,238 - PS417_10885 0.30 -0.2
2,327,438 - PS417_10885 0.39 -1.2
2,327,540 + PS417_10885 0.44 +2.4

Or see this region's nucleotide sequence