Experiment: 2-Furfuraldehyde 0.06 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08190 and PS417_08195 are separated by 73 nucleotides PS417_08195 and PS417_08200 overlap by 8 nucleotides PS417_08200 and PS417_08205 are separated by 42 nucleotides
PS417_08190: PS417_08190 - membrane protein, at 1,793,508 to 1,795,502
_08190
PS417_08195: PS417_08195 - hypothetical protein, at 1,795,576 to 1,796,793
_08195
PS417_08200: PS417_08200 - hypothetical protein, at 1,796,786 to 1,797,583
_08200
PS417_08205: PS417_08205 - acetyltransferase, at 1,797,626 to 1,798,270
_08205
Position (kb)
1795
1796
1797 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1794.626 kb on + strand, within PS417_08190 at 1794.626 kb on + strand, within PS417_08190 at 1794.627 kb on - strand, within PS417_08190 at 1794.627 kb on - strand, within PS417_08190 at 1794.648 kb on + strand, within PS417_08190 at 1794.649 kb on - strand, within PS417_08190 at 1794.665 kb on + strand, within PS417_08190 at 1794.692 kb on + strand, within PS417_08190 at 1794.779 kb on + strand, within PS417_08190 at 1794.780 kb on - strand, within PS417_08190 at 1794.780 kb on - strand, within PS417_08190 at 1795.151 kb on - strand, within PS417_08190 at 1795.556 kb on - strand at 1795.572 kb on + strand at 1795.572 kb on + strand at 1795.573 kb on - strand at 1795.573 kb on - strand at 1795.573 kb on - strand at 1795.620 kb on - strand at 1795.748 kb on + strand, within PS417_08195 at 1795.772 kb on + strand, within PS417_08195 at 1795.847 kb on - strand, within PS417_08195 at 1795.880 kb on - strand, within PS417_08195 at 1795.883 kb on + strand, within PS417_08195 at 1795.884 kb on - strand, within PS417_08195 at 1795.884 kb on - strand at 1795.884 kb on - strand, within PS417_08195 at 1795.902 kb on - strand, within PS417_08195 at 1795.902 kb on - strand, within PS417_08195 at 1795.965 kb on - strand, within PS417_08195 at 1795.972 kb on - strand, within PS417_08195 at 1796.098 kb on - strand, within PS417_08195 at 1796.098 kb on - strand, within PS417_08195 at 1796.159 kb on + strand, within PS417_08195 at 1796.314 kb on - strand, within PS417_08195 at 1796.394 kb on - strand, within PS417_08195 at 1796.394 kb on - strand, within PS417_08195 at 1796.404 kb on + strand, within PS417_08195 at 1796.438 kb on - strand, within PS417_08195 at 1796.458 kb on + strand, within PS417_08195 at 1796.459 kb on - strand, within PS417_08195 at 1796.512 kb on + strand, within PS417_08195 at 1796.558 kb on + strand, within PS417_08195 at 1796.578 kb on + strand, within PS417_08195 at 1796.579 kb on - strand, within PS417_08195 at 1796.740 kb on - strand at 1796.740 kb on - strand at 1796.740 kb on - strand at 1796.743 kb on + strand at 1796.744 kb on - strand at 1796.812 kb on + strand at 1796.812 kb on + strand at 1796.868 kb on - strand, within PS417_08200 at 1797.094 kb on + strand, within PS417_08200 at 1797.271 kb on - strand, within PS417_08200 at 1797.284 kb on - strand, within PS417_08200 at 1797.285 kb on + strand, within PS417_08200 at 1797.417 kb on + strand, within PS417_08200 at 1797.486 kb on + strand, within PS417_08200 at 1797.563 kb on + strand at 1797.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.06 vol% remove 1,794,626 + PS417_08190 0.56 -0.4 1,794,626 + PS417_08190 0.56 +0.1 1,794,627 - PS417_08190 0.56 -0.1 1,794,627 - PS417_08190 0.56 -0.1 1,794,648 + PS417_08190 0.57 -1.7 1,794,649 - PS417_08190 0.57 -0.9 1,794,665 + PS417_08190 0.58 -0.4 1,794,692 + PS417_08190 0.59 -0.1 1,794,779 + PS417_08190 0.64 +0.2 1,794,780 - PS417_08190 0.64 -0.4 1,794,780 - PS417_08190 0.64 +0.3 1,795,151 - PS417_08190 0.82 +0.3 1,795,556 - +0.3 1,795,572 + -0.1 1,795,572 + -0.1 1,795,573 - -0.2 1,795,573 - -0.6 1,795,573 - +1.3 1,795,620 - +0.3 1,795,748 + PS417_08195 0.14 -0.3 1,795,772 + PS417_08195 0.16 -2.1 1,795,847 - PS417_08195 0.22 -2.3 1,795,880 - PS417_08195 0.25 -1.1 1,795,883 + PS417_08195 0.25 -0.1 1,795,884 - PS417_08195 0.25 -0.5 1,795,884 - +2.3 1,795,884 - PS417_08195 0.25 -0.9 1,795,902 - PS417_08195 0.27 -0.3 1,795,902 - PS417_08195 0.27 -0.3 1,795,965 - PS417_08195 0.32 -0.9 1,795,972 - PS417_08195 0.33 +0.3 1,796,098 - PS417_08195 0.43 -0.5 1,796,098 - PS417_08195 0.43 -0.7 1,796,159 + PS417_08195 0.48 +0.1 1,796,314 - PS417_08195 0.61 -2.4 1,796,394 - PS417_08195 0.67 -0.3 1,796,394 - PS417_08195 0.67 +2.3 1,796,404 + PS417_08195 0.68 -0.9 1,796,438 - PS417_08195 0.71 -0.6 1,796,458 + PS417_08195 0.72 -0.5 1,796,459 - PS417_08195 0.72 -0.7 1,796,512 + PS417_08195 0.77 +0.1 1,796,558 + PS417_08195 0.81 -0.4 1,796,578 + PS417_08195 0.82 -1.1 1,796,579 - PS417_08195 0.82 -0.6 1,796,740 - -0.9 1,796,740 - +0.3 1,796,740 - +0.9 1,796,743 + -1.1 1,796,744 - -0.2 1,796,812 + +0.7 1,796,812 + +0.1 1,796,868 - PS417_08200 0.10 +0.4 1,797,094 + PS417_08200 0.39 -3.0 1,797,271 - PS417_08200 0.61 -0.7 1,797,284 - PS417_08200 0.62 +0.1 1,797,285 + PS417_08200 0.63 +1.0 1,797,417 + PS417_08200 0.79 -0.0 1,797,486 + PS417_08200 0.88 -1.4 1,797,563 + +0.1 1,797,589 - -2.0
Or see this region's nucleotide sequence