Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4582 and Echvi_4583 are separated by 886 nucleotides Echvi_4583 and Echvi_4584 overlap by 11 nucleotides
Echvi_4582: Echvi_4582 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 5,488,049 to 5,488,462
_4582
Echvi_4583: Echvi_4583 - Aspartate/tyrosine/aromatic aminotransferase, at 5,489,349 to 5,490,677
_4583
Echvi_4584: Echvi_4584 - hypothetical protein, at 5,490,667 to 5,492,070
_4584
Position (kb)
5489
5490
5491 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5488.392 kb on + strand, within Echvi_4582 at 5488.394 kb on - strand, within Echvi_4582 at 5488.465 kb on + strand at 5488.466 kb on - strand at 5488.466 kb on - strand at 5488.467 kb on + strand at 5488.530 kb on + strand at 5488.535 kb on + strand at 5488.536 kb on - strand at 5488.612 kb on + strand at 5488.678 kb on + strand at 5488.689 kb on + strand at 5488.689 kb on + strand at 5488.690 kb on - strand at 5488.690 kb on - strand at 5488.751 kb on + strand at 5488.751 kb on + strand at 5488.751 kb on + strand at 5488.776 kb on - strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.797 kb on + strand at 5488.798 kb on - strand at 5488.798 kb on - strand at 5488.798 kb on - strand at 5488.798 kb on - strand at 5488.798 kb on - strand at 5488.800 kb on - strand at 5488.800 kb on - strand at 5488.801 kb on + strand at 5488.802 kb on - strand at 5488.927 kb on + strand at 5488.928 kb on - strand at 5488.950 kb on - strand at 5488.985 kb on - strand at 5489.040 kb on - strand at 5489.253 kb on - strand at 5489.321 kb on + strand at 5489.321 kb on + strand at 5489.322 kb on - strand at 5489.327 kb on + strand at 5489.328 kb on - strand at 5489.422 kb on + strand at 5489.424 kb on + strand at 5489.424 kb on + strand at 5489.425 kb on - strand at 5489.705 kb on - strand, within Echvi_4583 at 5489.705 kb on - strand, within Echvi_4583 at 5489.722 kb on + strand, within Echvi_4583 at 5490.141 kb on + strand, within Echvi_4583 at 5490.142 kb on - strand, within Echvi_4583 at 5490.194 kb on - strand, within Echvi_4583 at 5490.217 kb on + strand, within Echvi_4583 at 5490.218 kb on - strand, within Echvi_4583 at 5490.225 kb on + strand, within Echvi_4583 at 5490.226 kb on - strand, within Echvi_4583 at 5490.228 kb on - strand, within Echvi_4583 at 5490.375 kb on + strand, within Echvi_4583 at 5490.376 kb on - strand, within Echvi_4583 at 5490.439 kb on + strand, within Echvi_4583 at 5490.439 kb on + strand, within Echvi_4583 at 5490.439 kb on + strand, within Echvi_4583 at 5490.516 kb on + strand, within Echvi_4583 at 5490.517 kb on - strand, within Echvi_4583 at 5490.517 kb on - strand, within Echvi_4583 at 5490.517 kb on - strand, within Echvi_4583 at 5490.517 kb on - strand, within Echvi_4583 at 5490.517 kb on - strand, within Echvi_4583 at 5490.597 kb on + strand at 5490.598 kb on - strand at 5490.645 kb on + strand at 5490.645 kb on + strand at 5490.646 kb on - strand at 5490.668 kb on + strand at 5490.729 kb on - strand at 5490.980 kb on - strand, within Echvi_4584 at 5490.983 kb on + strand, within Echvi_4584 at 5490.983 kb on + strand, within Echvi_4584 at 5491.005 kb on - strand, within Echvi_4584 at 5491.028 kb on + strand, within Echvi_4584 at 5491.029 kb on - strand, within Echvi_4584 at 5491.208 kb on - strand, within Echvi_4584 at 5491.240 kb on - strand, within Echvi_4584
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 5,488,392 + Echvi_4582 0.83 +0.4 5,488,394 - Echvi_4582 0.83 +1.2 5,488,465 + +2.1 5,488,466 - +0.2 5,488,466 - +0.5 5,488,467 + -1.2 5,488,530 + -1.2 5,488,535 + +0.5 5,488,536 - -0.1 5,488,612 + +0.7 5,488,678 + -0.1 5,488,689 + +1.2 5,488,689 + -0.3 5,488,690 - +1.3 5,488,690 - +1.0 5,488,751 + -1.6 5,488,751 + +0.8 5,488,751 + -0.3 5,488,776 - +0.5 5,488,797 + +0.4 5,488,797 + +0.5 5,488,797 + +0.3 5,488,797 + +1.4 5,488,797 + -1.8 5,488,797 + -0.0 5,488,798 - +1.1 5,488,798 - -0.3 5,488,798 - +1.1 5,488,798 - +2.1 5,488,798 - +2.0 5,488,800 - +1.0 5,488,800 - +0.6 5,488,801 + -0.1 5,488,802 - -0.1 5,488,927 + +0.9 5,488,928 - +1.1 5,488,950 - +0.7 5,488,985 - -1.1 5,489,040 - +0.6 5,489,253 - +1.0 5,489,321 + -0.6 5,489,321 + -0.5 5,489,322 - +0.2 5,489,327 + +0.5 5,489,328 - +0.4 5,489,422 + -0.7 5,489,424 + -2.5 5,489,424 + +1.7 5,489,425 - +0.3 5,489,705 - Echvi_4583 0.27 -1.5 5,489,705 - Echvi_4583 0.27 -0.6 5,489,722 + Echvi_4583 0.28 +0.5 5,490,141 + Echvi_4583 0.60 +1.4 5,490,142 - Echvi_4583 0.60 -0.4 5,490,194 - Echvi_4583 0.64 +1.3 5,490,217 + Echvi_4583 0.65 -0.2 5,490,218 - Echvi_4583 0.65 +1.8 5,490,225 + Echvi_4583 0.66 -0.2 5,490,226 - Echvi_4583 0.66 -0.1 5,490,228 - Echvi_4583 0.66 -0.1 5,490,375 + Echvi_4583 0.77 -3.1 5,490,376 - Echvi_4583 0.77 -1.6 5,490,439 + Echvi_4583 0.82 +1.1 5,490,439 + Echvi_4583 0.82 -0.5 5,490,439 + Echvi_4583 0.82 +1.2 5,490,516 + Echvi_4583 0.88 -1.6 5,490,517 - Echvi_4583 0.88 -0.0 5,490,517 - Echvi_4583 0.88 +2.1 5,490,517 - Echvi_4583 0.88 -1.2 5,490,517 - Echvi_4583 0.88 +1.5 5,490,517 - Echvi_4583 0.88 +0.2 5,490,597 + +0.9 5,490,598 - +1.9 5,490,645 + +1.6 5,490,645 + -1.5 5,490,646 - -0.4 5,490,668 + -0.1 5,490,729 - +1.7 5,490,980 - Echvi_4584 0.22 +0.8 5,490,983 + Echvi_4584 0.23 +0.4 5,490,983 + Echvi_4584 0.23 -0.5 5,491,005 - Echvi_4584 0.24 +0.8 5,491,028 + Echvi_4584 0.26 +1.4 5,491,029 - Echvi_4584 0.26 -0.3 5,491,208 - Echvi_4584 0.39 +0.0 5,491,240 - Echvi_4584 0.41 -0.6
Or see this region's nucleotide sequence