Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4410 and Echvi_4411 are separated by 167 nucleotides Echvi_4411 and Echvi_4412 overlap by 4 nucleotides
Echvi_4410: Echvi_4410 - nucleotide sugar dehydrogenase, at 5,273,443 to 5,274,759
_4410
Echvi_4411: Echvi_4411 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 5,274,927 to 5,275,805
_4411
Echvi_4412: Echvi_4412 - hypothetical protein, at 5,275,802 to 5,277,331
_4412
Position (kb)
5274
5275
5276 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5273.991 kb on - strand, within Echvi_4410 at 5273.991 kb on - strand, within Echvi_4410 at 5274.042 kb on + strand, within Echvi_4410 at 5274.058 kb on + strand, within Echvi_4410 at 5274.128 kb on + strand, within Echvi_4410 at 5274.129 kb on - strand, within Echvi_4410 at 5274.161 kb on + strand, within Echvi_4410 at 5274.162 kb on - strand, within Echvi_4410 at 5274.198 kb on - strand, within Echvi_4410 at 5274.371 kb on - strand, within Echvi_4410 at 5274.375 kb on + strand, within Echvi_4410 at 5274.399 kb on + strand, within Echvi_4410 at 5274.420 kb on + strand, within Echvi_4410 at 5274.422 kb on + strand, within Echvi_4410 at 5274.422 kb on + strand, within Echvi_4410 at 5274.540 kb on + strand, within Echvi_4410 at 5274.585 kb on - strand, within Echvi_4410 at 5274.621 kb on - strand, within Echvi_4410 at 5274.727 kb on + strand at 5274.728 kb on - strand at 5274.728 kb on - strand at 5274.728 kb on - strand at 5274.728 kb on - strand at 5274.742 kb on + strand at 5274.743 kb on - strand at 5274.745 kb on + strand at 5274.750 kb on + strand at 5274.773 kb on - strand at 5274.783 kb on + strand at 5274.783 kb on + strand at 5274.784 kb on - strand at 5274.798 kb on - strand at 5274.799 kb on + strand at 5274.802 kb on + strand at 5274.802 kb on + strand at 5274.802 kb on + strand at 5274.802 kb on + strand at 5274.859 kb on + strand at 5275.061 kb on - strand, within Echvi_4411 at 5275.061 kb on - strand, within Echvi_4411 at 5275.061 kb on - strand, within Echvi_4411 at 5275.193 kb on + strand, within Echvi_4411 at 5275.194 kb on - strand, within Echvi_4411 at 5275.194 kb on - strand, within Echvi_4411 at 5275.194 kb on - strand, within Echvi_4411 at 5275.194 kb on - strand, within Echvi_4411 at 5275.288 kb on - strand, within Echvi_4411 at 5275.321 kb on - strand, within Echvi_4411 at 5275.352 kb on + strand, within Echvi_4411 at 5275.352 kb on + strand, within Echvi_4411 at 5275.352 kb on + strand, within Echvi_4411 at 5275.352 kb on + strand, within Echvi_4411 at 5275.356 kb on + strand, within Echvi_4411 at 5275.356 kb on + strand, within Echvi_4411 at 5275.357 kb on - strand, within Echvi_4411 at 5275.357 kb on - strand, within Echvi_4411 at 5275.357 kb on - strand, within Echvi_4411 at 5275.357 kb on - strand, within Echvi_4411 at 5275.357 kb on - strand, within Echvi_4411 at 5275.445 kb on - strand, within Echvi_4411 at 5275.465 kb on + strand, within Echvi_4411 at 5275.634 kb on + strand, within Echvi_4411 at 5275.634 kb on + strand, within Echvi_4411 at 5275.635 kb on - strand, within Echvi_4411 at 5275.703 kb on + strand, within Echvi_4411 at 5275.704 kb on - strand, within Echvi_4411 at 5275.704 kb on - strand, within Echvi_4411 at 5275.835 kb on - strand at 5275.849 kb on + strand at 5275.884 kb on + strand at 5275.959 kb on + strand, within Echvi_4412 at 5275.962 kb on + strand, within Echvi_4412 at 5275.962 kb on + strand, within Echvi_4412 at 5275.963 kb on - strand, within Echvi_4412 at 5275.968 kb on + strand, within Echvi_4412 at 5275.969 kb on - strand, within Echvi_4412 at 5275.977 kb on - strand, within Echvi_4412 at 5276.045 kb on - strand, within Echvi_4412 at 5276.053 kb on + strand, within Echvi_4412 at 5276.158 kb on - strand, within Echvi_4412 at 5276.198 kb on - strand, within Echvi_4412 at 5276.205 kb on + strand, within Echvi_4412 at 5276.283 kb on - strand, within Echvi_4412 at 5276.330 kb on + strand, within Echvi_4412 at 5276.451 kb on + strand, within Echvi_4412 at 5276.552 kb on + strand, within Echvi_4412 at 5276.770 kb on - strand, within Echvi_4412
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 5,273,991 - Echvi_4410 0.42 +1.4 5,273,991 - Echvi_4410 0.42 -0.1 5,274,042 + Echvi_4410 0.45 -0.9 5,274,058 + Echvi_4410 0.47 +2.1 5,274,128 + Echvi_4410 0.52 -0.5 5,274,129 - Echvi_4410 0.52 +1.1 5,274,161 + Echvi_4410 0.55 -0.5 5,274,162 - Echvi_4410 0.55 -0.4 5,274,198 - Echvi_4410 0.57 +2.1 5,274,371 - Echvi_4410 0.70 +2.7 5,274,375 + Echvi_4410 0.71 +0.1 5,274,399 + Echvi_4410 0.73 -0.5 5,274,420 + Echvi_4410 0.74 -0.7 5,274,422 + Echvi_4410 0.74 -0.6 5,274,422 + Echvi_4410 0.74 -0.4 5,274,540 + Echvi_4410 0.83 +0.3 5,274,585 - Echvi_4410 0.87 -0.8 5,274,621 - Echvi_4410 0.89 -0.1 5,274,727 + -1.7 5,274,728 - +1.5 5,274,728 - +0.0 5,274,728 - +0.2 5,274,728 - -0.3 5,274,742 + +0.1 5,274,743 - +2.4 5,274,745 + +0.9 5,274,750 + +1.4 5,274,773 - +1.1 5,274,783 + -0.0 5,274,783 + -2.9 5,274,784 - +1.3 5,274,798 - +0.2 5,274,799 + +2.8 5,274,802 + +0.5 5,274,802 + +0.3 5,274,802 + -0.2 5,274,802 + -2.5 5,274,859 + +1.7 5,275,061 - Echvi_4411 0.15 -0.4 5,275,061 - Echvi_4411 0.15 -0.2 5,275,061 - Echvi_4411 0.15 +0.5 5,275,193 + Echvi_4411 0.30 -1.0 5,275,194 - Echvi_4411 0.30 +1.6 5,275,194 - Echvi_4411 0.30 +0.3 5,275,194 - Echvi_4411 0.30 +0.2 5,275,194 - Echvi_4411 0.30 +0.5 5,275,288 - Echvi_4411 0.41 +0.2 5,275,321 - Echvi_4411 0.45 -0.4 5,275,352 + Echvi_4411 0.48 +0.8 5,275,352 + Echvi_4411 0.48 +0.7 5,275,352 + Echvi_4411 0.48 -0.7 5,275,352 + Echvi_4411 0.48 -0.6 5,275,356 + Echvi_4411 0.49 -2.0 5,275,356 + Echvi_4411 0.49 +1.1 5,275,357 - Echvi_4411 0.49 +1.3 5,275,357 - Echvi_4411 0.49 +1.2 5,275,357 - Echvi_4411 0.49 +1.0 5,275,357 - Echvi_4411 0.49 -0.2 5,275,357 - Echvi_4411 0.49 +0.5 5,275,445 - Echvi_4411 0.59 +1.0 5,275,465 + Echvi_4411 0.61 -0.8 5,275,634 + Echvi_4411 0.80 +1.7 5,275,634 + Echvi_4411 0.80 -0.9 5,275,635 - Echvi_4411 0.81 +0.6 5,275,703 + Echvi_4411 0.88 +1.7 5,275,704 - Echvi_4411 0.88 +1.3 5,275,704 - Echvi_4411 0.88 +1.5 5,275,835 - +1.6 5,275,849 + +0.4 5,275,884 + -0.3 5,275,959 + Echvi_4412 0.10 +0.6 5,275,962 + Echvi_4412 0.10 -2.1 5,275,962 + Echvi_4412 0.10 +0.9 5,275,963 - Echvi_4412 0.11 +0.2 5,275,968 + Echvi_4412 0.11 +0.3 5,275,969 - Echvi_4412 0.11 +2.3 5,275,977 - Echvi_4412 0.11 -1.1 5,276,045 - Echvi_4412 0.16 +1.2 5,276,053 + Echvi_4412 0.16 +0.3 5,276,158 - Echvi_4412 0.23 -1.4 5,276,198 - Echvi_4412 0.26 +0.5 5,276,205 + Echvi_4412 0.26 +0.1 5,276,283 - Echvi_4412 0.31 -0.7 5,276,330 + Echvi_4412 0.35 -0.8 5,276,451 + Echvi_4412 0.42 +0.8 5,276,552 + Echvi_4412 0.49 +0.6 5,276,770 - Echvi_4412 0.63 +1.5
Or see this region's nucleotide sequence