Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3066

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3064 and Echvi_3065 are separated by 64 nucleotidesEchvi_3065 and Echvi_3066 are separated by 59 nucleotides Echvi_3064: Echvi_3064 - FeS assembly protein SufB, at 3,657,246 to 3,658,691 _3064 Echvi_3065: Echvi_3065 - hypothetical protein, at 3,658,756 to 3,658,893 _3065 Echvi_3066: Echvi_3066 - Transcriptional regulators, at 3,658,953 to 3,659,429 _3066 Position (kb) 3658 3659 3660Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3658.743 kb on - strandat 3658.790 kb on + strand, within Echvi_3065at 3658.896 kb on - strandat 3659.676 kb on - strandat 3659.730 kb on + strandat 3659.731 kb on - strandat 3659.819 kb on - strandat 3659.819 kb on - strandat 3659.821 kb on + strandat 3659.822 kb on - strandat 3659.831 kb on - strandat 3659.831 kb on - strandat 3659.982 kb on + strandat 3659.982 kb on + strandat 3660.018 kb on - strandat 3660.018 kb on - strandat 3660.018 kb on - strandat 3660.018 kb on - strandat 3660.018 kb on - strandat 3660.018 kb on - strandat 3660.032 kb on - strandat 3660.032 kb on - strandat 3660.269 kb on - strandat 3660.269 kb on - strandat 3660.269 kb on - strandat 3660.286 kb on - strandat 3660.286 kb on - strandat 3660.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,658,743 - +0.3
3,658,790 + Echvi_3065 0.25 +0.7
3,658,896 - +0.7
3,659,676 - -0.0
3,659,730 + -0.5
3,659,731 - -1.8
3,659,819 - -1.0
3,659,819 - -2.2
3,659,821 + -0.1
3,659,822 - +0.0
3,659,831 - +1.8
3,659,831 - -1.8
3,659,982 + -0.6
3,659,982 + +0.7
3,660,018 - +1.5
3,660,018 - -2.0
3,660,018 - -0.5
3,660,018 - +0.1
3,660,018 - +0.9
3,660,018 - -0.9
3,660,032 - +0.6
3,660,032 - +1.1
3,660,269 - +0.2
3,660,269 - -0.0
3,660,269 - +0.3
3,660,286 - -1.6
3,660,286 - -1.5
3,660,286 - +3.4

Or see this region's nucleotide sequence