Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2384 and Echvi_2385 are separated by 194 nucleotides Echvi_2385 and Echvi_2386 are separated by 340 nucleotides Echvi_2386 and Echvi_2387 are separated by 45 nucleotides
Echvi_2384: Echvi_2384 - GSCFA family., at 2,828,635 to 2,829,615
_2384
Echvi_2385: Echvi_2385 - hypothetical protein, at 2,829,810 to 2,830,058
_2385
Echvi_2386: Echvi_2386 - ribosomal protein L9, at 2,830,399 to 2,830,842
_2386
Echvi_2387: Echvi_2387 - ribosomal protein S18, at 2,830,888 to 2,831,139
_2387
Position (kb)
2829
2830
2831 Strain fitness (log2 ratio)
-1
0
1
2 at 2828.842 kb on - strand, within Echvi_2384 at 2828.861 kb on + strand, within Echvi_2384 at 2828.861 kb on + strand, within Echvi_2384 at 2828.862 kb on - strand, within Echvi_2384 at 2828.903 kb on + strand, within Echvi_2384 at 2828.943 kb on - strand, within Echvi_2384 at 2829.001 kb on + strand, within Echvi_2384 at 2829.001 kb on + strand, within Echvi_2384 at 2829.133 kb on + strand, within Echvi_2384 at 2829.134 kb on - strand, within Echvi_2384 at 2829.134 kb on - strand, within Echvi_2384 at 2829.224 kb on + strand, within Echvi_2384 at 2829.224 kb on + strand, within Echvi_2384 at 2829.225 kb on - strand, within Echvi_2384 at 2829.225 kb on - strand, within Echvi_2384 at 2829.328 kb on - strand, within Echvi_2384 at 2829.359 kb on + strand, within Echvi_2384 at 2829.360 kb on - strand, within Echvi_2384 at 2829.442 kb on + strand, within Echvi_2384 at 2829.442 kb on + strand, within Echvi_2384 at 2829.443 kb on - strand, within Echvi_2384 at 2829.519 kb on + strand at 2829.547 kb on - strand at 2829.570 kb on + strand at 2829.608 kb on - strand at 2829.615 kb on + strand at 2829.662 kb on - strand at 2829.781 kb on + strand at 2829.821 kb on + strand at 2829.822 kb on - strand at 2829.822 kb on - strand at 2829.822 kb on - strand at 2829.859 kb on + strand, within Echvi_2385 at 2830.016 kb on + strand, within Echvi_2385 at 2830.176 kb on + strand at 2830.204 kb on + strand at 2830.204 kb on + strand at 2830.204 kb on + strand at 2830.377 kb on + strand at 2830.453 kb on + strand, within Echvi_2386
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,828,842 - Echvi_2384 0.21 -1.0 2,828,861 + Echvi_2384 0.23 +0.2 2,828,861 + Echvi_2384 0.23 +1.5 2,828,862 - Echvi_2384 0.23 +0.0 2,828,903 + Echvi_2384 0.27 +1.9 2,828,943 - Echvi_2384 0.31 -1.2 2,829,001 + Echvi_2384 0.37 +1.2 2,829,001 + Echvi_2384 0.37 -1.0 2,829,133 + Echvi_2384 0.51 -0.6 2,829,134 - Echvi_2384 0.51 -0.1 2,829,134 - Echvi_2384 0.51 -0.6 2,829,224 + Echvi_2384 0.60 -0.7 2,829,224 + Echvi_2384 0.60 +0.9 2,829,225 - Echvi_2384 0.60 -0.1 2,829,225 - Echvi_2384 0.60 +0.5 2,829,328 - Echvi_2384 0.71 +0.0 2,829,359 + Echvi_2384 0.74 +0.2 2,829,360 - Echvi_2384 0.74 +0.1 2,829,442 + Echvi_2384 0.82 +1.4 2,829,442 + Echvi_2384 0.82 +0.1 2,829,443 - Echvi_2384 0.82 +0.3 2,829,519 + +0.7 2,829,547 - +0.5 2,829,570 + -1.5 2,829,608 - +0.3 2,829,615 + -0.0 2,829,662 - -1.4 2,829,781 + +0.3 2,829,821 + -0.0 2,829,822 - +0.3 2,829,822 - -0.5 2,829,822 - +0.9 2,829,859 + Echvi_2385 0.20 -0.8 2,830,016 + Echvi_2385 0.83 -0.7 2,830,176 + +0.9 2,830,204 + -1.1 2,830,204 + +1.2 2,830,204 + -0.1 2,830,377 + -0.4 2,830,453 + Echvi_2386 0.12 +2.2
Or see this region's nucleotide sequence