Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1752

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1750 and Echvi_1751 are separated by 6 nucleotidesEchvi_1751 and Echvi_1752 are separated by 118 nucleotidesEchvi_1752 and Echvi_1753 are separated by 507 nucleotides Echvi_1750: Echvi_1750 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 2,060,496 to 2,062,481 _1750 Echvi_1751: Echvi_1751 - Uncharacterized Fe-S protein, at 2,062,488 to 2,063,285 _1751 Echvi_1752: Echvi_1752 - hypothetical protein, at 2,063,404 to 2,063,634 _1752 Echvi_1753: Echvi_1753 - chaperone protein DnaK, at 2,064,142 to 2,066,082 _1753 Position (kb) 2063 2064Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2062.418 kb on - strandat 2062.455 kb on - strandat 2062.589 kb on + strand, within Echvi_1751at 2062.589 kb on + strand, within Echvi_1751at 2062.685 kb on + strand, within Echvi_1751at 2062.685 kb on + strand, within Echvi_1751at 2062.685 kb on + strand, within Echvi_1751at 2062.695 kb on + strand, within Echvi_1751at 2062.696 kb on - strand, within Echvi_1751at 2062.704 kb on - strand, within Echvi_1751at 2062.834 kb on + strand, within Echvi_1751at 2062.966 kb on - strand, within Echvi_1751at 2063.086 kb on - strand, within Echvi_1751at 2063.086 kb on - strand, within Echvi_1751at 2063.121 kb on + strand, within Echvi_1751at 2063.121 kb on + strand, within Echvi_1751at 2063.210 kb on + strandat 2063.211 kb on - strandat 2063.211 kb on - strandat 2063.211 kb on - strandat 2063.225 kb on + strandat 2063.225 kb on + strandat 2063.226 kb on - strandat 2063.226 kb on - strandat 2063.230 kb on - strandat 2063.260 kb on + strandat 2063.261 kb on - strandat 2063.261 kb on - strandat 2063.266 kb on + strandat 2063.267 kb on - strandat 2063.267 kb on - strandat 2063.267 kb on - strandat 2063.267 kb on - strandat 2063.267 kb on - strandat 2063.269 kb on - strandat 2063.297 kb on - strandat 2063.304 kb on + strandat 2063.370 kb on + strandat 2063.371 kb on - strandat 2063.371 kb on - strandat 2063.470 kb on + strand, within Echvi_1752at 2063.520 kb on + strand, within Echvi_1752at 2063.521 kb on - strand, within Echvi_1752at 2063.590 kb on + strand, within Echvi_1752at 2063.591 kb on - strand, within Echvi_1752at 2063.604 kb on + strand, within Echvi_1752at 2063.605 kb on - strand, within Echvi_1752at 2063.605 kb on - strand, within Echvi_1752at 2063.717 kb on + strandat 2063.738 kb on + strandat 2063.799 kb on + strandat 2063.837 kb on + strandat 2063.926 kb on + strandat 2063.926 kb on + strandat 2063.927 kb on - strandat 2063.927 kb on - strandat 2063.927 kb on - strandat 2063.989 kb on + strandat 2064.095 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,062,418 - -0.5
2,062,455 - -1.5
2,062,589 + Echvi_1751 0.13 +2.2
2,062,589 + Echvi_1751 0.13 +0.6
2,062,685 + Echvi_1751 0.25 -1.4
2,062,685 + Echvi_1751 0.25 +0.4
2,062,685 + Echvi_1751 0.25 -0.1
2,062,695 + Echvi_1751 0.26 +1.7
2,062,696 - Echvi_1751 0.26 -0.2
2,062,704 - Echvi_1751 0.27 +0.2
2,062,834 + Echvi_1751 0.43 +3.4
2,062,966 - Echvi_1751 0.60 +0.0
2,063,086 - Echvi_1751 0.75 +0.5
2,063,086 - Echvi_1751 0.75 +0.2
2,063,121 + Echvi_1751 0.79 +0.8
2,063,121 + Echvi_1751 0.79 -1.1
2,063,210 + -0.7
2,063,211 - +0.2
2,063,211 - -0.1
2,063,211 - -0.4
2,063,225 + -0.9
2,063,225 + -0.2
2,063,226 - +0.6
2,063,226 - +0.2
2,063,230 - -1.3
2,063,260 + -0.1
2,063,261 - -0.3
2,063,261 - +1.2
2,063,266 + -0.4
2,063,267 - +0.6
2,063,267 - +0.4
2,063,267 - +0.4
2,063,267 - -0.1
2,063,267 - +3.2
2,063,269 - -0.9
2,063,297 - +0.3
2,063,304 + +1.4
2,063,370 + -0.2
2,063,371 - -0.2
2,063,371 - +0.8
2,063,470 + Echvi_1752 0.29 +0.4
2,063,520 + Echvi_1752 0.50 -2.2
2,063,521 - Echvi_1752 0.51 +1.8
2,063,590 + Echvi_1752 0.81 +0.3
2,063,591 - Echvi_1752 0.81 +0.8
2,063,604 + Echvi_1752 0.87 +0.2
2,063,605 - Echvi_1752 0.87 +1.2
2,063,605 - Echvi_1752 0.87 +0.4
2,063,717 + -0.0
2,063,738 + -0.6
2,063,799 + -0.8
2,063,837 + -2.0
2,063,926 + -0.7
2,063,926 + -2.5
2,063,927 - -0.2
2,063,927 - +0.1
2,063,927 - +0.7
2,063,989 + -1.8
2,064,095 + +0.7

Or see this region's nucleotide sequence