Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0970 and Echvi_0971 are separated by 129 nucleotides Echvi_0971 and Echvi_0972 are separated by 25 nucleotides Echvi_0972 and Echvi_0973 are separated by 447 nucleotides
Echvi_0970: Echvi_0970 - 3-methyladenine DNA glycosylase, at 1,123,079 to 1,123,681
_0970
Echvi_0971: Echvi_0971 - Predicted membrane protein, at 1,123,811 to 1,124,191
_0971
Echvi_0972: Echvi_0972 - hypothetical protein, at 1,124,217 to 1,124,921
_0972
Echvi_0973: Echvi_0973 - hypothetical protein, at 1,125,369 to 1,125,782
_0973
Position (kb) 1124
1125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1123.301 kb on + strand, within Echvi_0970 at 1123.301 kb on + strand, within Echvi_0970 at 1123.302 kb on - strand, within Echvi_0970 at 1123.302 kb on - strand, within Echvi_0970 at 1123.303 kb on + strand, within Echvi_0970 at 1123.304 kb on - strand, within Echvi_0970 at 1123.304 kb on - strand, within Echvi_0970 at 1123.327 kb on + strand, within Echvi_0970 at 1123.327 kb on + strand, within Echvi_0970 at 1123.327 kb on + strand, within Echvi_0970 at 1123.328 kb on - strand, within Echvi_0970 at 1123.328 kb on - strand, within Echvi_0970 at 1123.399 kb on + strand, within Echvi_0970 at 1123.400 kb on - strand, within Echvi_0970 at 1123.451 kb on + strand, within Echvi_0970 at 1123.451 kb on + strand, within Echvi_0970 at 1123.452 kb on - strand, within Echvi_0970 at 1123.452 kb on - strand, within Echvi_0970 at 1123.454 kb on - strand, within Echvi_0970 at 1123.454 kb on - strand, within Echvi_0970 at 1123.474 kb on + strand, within Echvi_0970 at 1123.474 kb on + strand, within Echvi_0970 at 1123.586 kb on - strand, within Echvi_0970 at 1123.595 kb on + strand, within Echvi_0970 at 1123.595 kb on + strand, within Echvi_0970 at 1123.596 kb on - strand, within Echvi_0970 at 1123.604 kb on - strand, within Echvi_0970 at 1123.604 kb on - strand, within Echvi_0970 at 1123.662 kb on + strand at 1123.688 kb on + strand at 1123.689 kb on - strand at 1123.867 kb on + strand, within Echvi_0971 at 1123.868 kb on - strand, within Echvi_0971 at 1123.898 kb on + strand, within Echvi_0971 at 1123.899 kb on - strand, within Echvi_0971 at 1123.932 kb on + strand, within Echvi_0971 at 1123.933 kb on - strand, within Echvi_0971 at 1123.933 kb on - strand, within Echvi_0971 at 1123.954 kb on + strand, within Echvi_0971 at 1123.987 kb on + strand, within Echvi_0971 at 1123.987 kb on + strand, within Echvi_0971 at 1123.987 kb on + strand, within Echvi_0971 at 1123.987 kb on + strand, within Echvi_0971 at 1124.011 kb on - strand, within Echvi_0971 at 1124.019 kb on + strand, within Echvi_0971 at 1124.019 kb on + strand, within Echvi_0971 at 1124.020 kb on - strand, within Echvi_0971 at 1124.024 kb on + strand at 1124.072 kb on + strand, within Echvi_0971 at 1124.081 kb on + strand, within Echvi_0971 at 1124.081 kb on + strand, within Echvi_0971 at 1124.085 kb on - strand, within Echvi_0971 at 1124.085 kb on - strand, within Echvi_0971 at 1124.160 kb on + strand at 1124.181 kb on + strand at 1124.196 kb on + strand at 1124.196 kb on + strand at 1124.197 kb on - strand at 1124.198 kb on + strand at 1124.198 kb on + strand at 1124.199 kb on - strand at 1124.199 kb on - strand at 1124.204 kb on + strand at 1124.205 kb on - strand at 1124.235 kb on + strand at 1124.235 kb on + strand at 1124.303 kb on + strand, within Echvi_0972 at 1124.303 kb on + strand, within Echvi_0972 at 1124.303 kb on + strand, within Echvi_0972 at 1124.303 kb on + strand, within Echvi_0972 at 1124.303 kb on + strand, within Echvi_0972 at 1124.304 kb on - strand, within Echvi_0972 at 1124.304 kb on - strand, within Echvi_0972 at 1124.305 kb on + strand, within Echvi_0972 at 1124.360 kb on + strand, within Echvi_0972 at 1124.360 kb on + strand, within Echvi_0972 at 1124.416 kb on + strand, within Echvi_0972 at 1124.430 kb on + strand, within Echvi_0972 at 1124.435 kb on + strand, within Echvi_0972 at 1124.436 kb on - strand, within Echvi_0972 at 1124.436 kb on - strand, within Echvi_0972 at 1124.436 kb on - strand, within Echvi_0972 at 1124.460 kb on + strand, within Echvi_0972 at 1124.461 kb on - strand, within Echvi_0972 at 1124.480 kb on + strand, within Echvi_0972 at 1124.480 kb on + strand, within Echvi_0972 at 1124.481 kb on - strand, within Echvi_0972 at 1124.481 kb on - strand, within Echvi_0972 at 1124.481 kb on - strand, within Echvi_0972 at 1124.503 kb on + strand, within Echvi_0972 at 1124.503 kb on + strand, within Echvi_0972 at 1124.504 kb on - strand, within Echvi_0972 at 1124.504 kb on - strand, within Echvi_0972 at 1124.562 kb on - strand, within Echvi_0972 at 1124.581 kb on - strand, within Echvi_0972 at 1124.581 kb on - strand, within Echvi_0972 at 1124.610 kb on + strand, within Echvi_0972 at 1124.654 kb on + strand, within Echvi_0972 at 1124.654 kb on + strand, within Echvi_0972 at 1124.654 kb on + strand, within Echvi_0972 at 1124.655 kb on - strand, within Echvi_0972 at 1124.658 kb on + strand, within Echvi_0972 at 1124.658 kb on + strand, within Echvi_0972 at 1124.658 kb on + strand, within Echvi_0972 at 1124.658 kb on + strand, within Echvi_0972 at 1124.659 kb on - strand, within Echvi_0972 at 1124.665 kb on + strand, within Echvi_0972 at 1124.665 kb on + strand, within Echvi_0972 at 1124.665 kb on + strand, within Echvi_0972 at 1124.665 kb on + strand, within Echvi_0972 at 1124.665 kb on + strand, within Echvi_0972 at 1124.669 kb on - strand, within Echvi_0972 at 1124.678 kb on + strand, within Echvi_0972 at 1124.706 kb on + strand, within Echvi_0972 at 1124.713 kb on + strand, within Echvi_0972 at 1124.713 kb on + strand, within Echvi_0972 at 1124.713 kb on + strand, within Echvi_0972 at 1124.713 kb on + strand, within Echvi_0972 at 1124.714 kb on - strand, within Echvi_0972 at 1124.727 kb on + strand, within Echvi_0972 at 1124.727 kb on + strand, within Echvi_0972 at 1124.728 kb on - strand, within Echvi_0972 at 1124.732 kb on + strand, within Echvi_0972 at 1124.783 kb on + strand, within Echvi_0972 at 1124.783 kb on + strand, within Echvi_0972 at 1124.783 kb on + strand, within Echvi_0972 at 1124.783 kb on + strand, within Echvi_0972 at 1124.783 kb on + strand, within Echvi_0972 at 1124.784 kb on - strand, within Echvi_0972 at 1124.803 kb on - strand, within Echvi_0972 at 1124.803 kb on - strand, within Echvi_0972 at 1124.803 kb on - strand, within Echvi_0972 at 1124.815 kb on + strand, within Echvi_0972 at 1124.816 kb on - strand, within Echvi_0972 at 1124.823 kb on - strand, within Echvi_0972 at 1124.823 kb on - strand, within Echvi_0972 at 1124.824 kb on + strand, within Echvi_0972 at 1124.825 kb on - strand, within Echvi_0972 at 1124.856 kb on + strand at 1124.856 kb on + strand at 1124.857 kb on - strand at 1124.857 kb on - strand at 1124.857 kb on - strand at 1124.904 kb on - strand at 1124.930 kb on + strand at 1124.930 kb on + strand at 1124.930 kb on + strand at 1124.931 kb on - strand at 1124.931 kb on - strand at 1124.931 kb on - strand at 1124.931 kb on - strand at 1124.935 kb on + strand at 1124.999 kb on - strand at 1125.016 kb on + strand at 1125.040 kb on - strand at 1125.083 kb on + strand at 1125.084 kb on - strand at 1125.084 kb on - strand at 1125.105 kb on + strand at 1125.105 kb on + strand at 1125.105 kb on + strand at 1125.105 kb on + strand at 1125.106 kb on - strand at 1125.113 kb on + strand at 1125.228 kb on + strand at 1125.228 kb on + strand at 1125.229 kb on - strand at 1125.229 kb on - strand at 1125.229 kb on - strand at 1125.229 kb on - strand at 1125.247 kb on + strand at 1125.269 kb on + strand at 1125.292 kb on - strand at 1125.292 kb on - strand at 1125.305 kb on - strand at 1125.305 kb on - strand at 1125.322 kb on - strand at 1125.374 kb on + strand at 1125.374 kb on + strand at 1125.374 kb on + strand at 1125.374 kb on + strand at 1125.374 kb on + strand at 1125.375 kb on - strand at 1125.375 kb on - strand at 1125.378 kb on + strand at 1125.379 kb on - strand at 1125.379 kb on - strand at 1125.384 kb on - strand at 1125.384 kb on - strand at 1125.425 kb on + strand, within Echvi_0973 at 1125.426 kb on - strand, within Echvi_0973 at 1125.426 kb on - strand, within Echvi_0973 at 1125.429 kb on + strand, within Echvi_0973 at 1125.429 kb on + strand, within Echvi_0973 at 1125.430 kb on - strand, within Echvi_0973 at 1125.438 kb on + strand, within Echvi_0973 at 1125.438 kb on + strand, within Echvi_0973 at 1125.478 kb on + strand, within Echvi_0973 at 1125.483 kb on + strand, within Echvi_0973 at 1125.484 kb on - strand, within Echvi_0973 at 1125.484 kb on - strand, within Echvi_0973 at 1125.591 kb on - strand, within Echvi_0973 at 1125.591 kb on - strand, within Echvi_0973 at 1125.652 kb on + strand, within Echvi_0973 at 1125.652 kb on + strand, within Echvi_0973 at 1125.742 kb on + strand at 1125.743 kb on - strand at 1125.780 kb on + strand at 1125.780 kb on + strand at 1125.819 kb on - strand at 1125.826 kb on - strand at 1125.835 kb on + strand at 1125.853 kb on + strand at 1125.853 kb on + strand at 1125.853 kb on + strand at 1125.854 kb on - strand at 1125.854 kb on - strand at 1125.854 kb on - strand at 1125.882 kb on + strand at 1125.882 kb on + strand at 1125.882 kb on + strand at 1125.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 1,123,301 + Echvi_0970 0.37 -0.4 1,123,301 + Echvi_0970 0.37 -1.3 1,123,302 - Echvi_0970 0.37 -0.0 1,123,302 - Echvi_0970 0.37 -0.6 1,123,303 + Echvi_0970 0.37 +1.0 1,123,304 - Echvi_0970 0.37 -0.8 1,123,304 - Echvi_0970 0.37 -0.8 1,123,327 + Echvi_0970 0.41 +1.1 1,123,327 + Echvi_0970 0.41 +0.3 1,123,327 + Echvi_0970 0.41 +1.2 1,123,328 - Echvi_0970 0.41 +0.5 1,123,328 - Echvi_0970 0.41 -1.7 1,123,399 + Echvi_0970 0.53 +0.6 1,123,400 - Echvi_0970 0.53 +1.1 1,123,451 + Echvi_0970 0.62 -0.5 1,123,451 + Echvi_0970 0.62 -1.4 1,123,452 - Echvi_0970 0.62 +0.8 1,123,452 - Echvi_0970 0.62 -0.0 1,123,454 - Echvi_0970 0.62 +0.8 1,123,454 - Echvi_0970 0.62 -0.2 1,123,474 + Echvi_0970 0.66 -1.7 1,123,474 + Echvi_0970 0.66 -0.0 1,123,586 - Echvi_0970 0.84 -1.7 1,123,595 + Echvi_0970 0.86 -0.5 1,123,595 + Echvi_0970 0.86 -0.7 1,123,596 - Echvi_0970 0.86 +0.1 1,123,604 - Echvi_0970 0.87 -0.9 1,123,604 - Echvi_0970 0.87 +2.3 1,123,662 + +0.5 1,123,688 + -0.4 1,123,689 - +0.3 1,123,867 + Echvi_0971 0.15 -0.9 1,123,868 - Echvi_0971 0.15 +0.7 1,123,898 + Echvi_0971 0.23 -1.3 1,123,899 - Echvi_0971 0.23 -1.1 1,123,932 + Echvi_0971 0.32 -1.1 1,123,933 - Echvi_0971 0.32 -0.1 1,123,933 - Echvi_0971 0.32 +0.0 1,123,954 + Echvi_0971 0.38 +0.1 1,123,987 + Echvi_0971 0.46 -0.4 1,123,987 + Echvi_0971 0.46 -1.4 1,123,987 + Echvi_0971 0.46 -0.2 1,123,987 + Echvi_0971 0.46 +0.8 1,124,011 - Echvi_0971 0.52 +1.3 1,124,019 + Echvi_0971 0.55 -2.2 1,124,019 + Echvi_0971 0.55 +2.9 1,124,020 - Echvi_0971 0.55 +2.3 1,124,024 + +1.3 1,124,072 + Echvi_0971 0.69 +0.9 1,124,081 + Echvi_0971 0.71 +0.3 1,124,081 + Echvi_0971 0.71 +1.2 1,124,085 - Echvi_0971 0.72 +0.6 1,124,085 - Echvi_0971 0.72 -0.7 1,124,160 + -0.4 1,124,181 + -1.8 1,124,196 + +0.7 1,124,196 + -1.3 1,124,197 - -0.8 1,124,198 + -0.4 1,124,198 + +0.9 1,124,199 - -0.5 1,124,199 - -1.5 1,124,204 + +1.5 1,124,205 - +1.3 1,124,235 + -0.0 1,124,235 + +0.6 1,124,303 + Echvi_0972 0.12 -0.6 1,124,303 + Echvi_0972 0.12 -0.1 1,124,303 + Echvi_0972 0.12 +1.2 1,124,303 + Echvi_0972 0.12 +0.5 1,124,303 + Echvi_0972 0.12 -1.3 1,124,304 - Echvi_0972 0.12 +0.7 1,124,304 - Echvi_0972 0.12 -1.1 1,124,305 + Echvi_0972 0.12 -0.6 1,124,360 + Echvi_0972 0.20 +0.8 1,124,360 + Echvi_0972 0.20 +0.0 1,124,416 + Echvi_0972 0.28 +0.2 1,124,430 + Echvi_0972 0.30 +0.2 1,124,435 + Echvi_0972 0.31 -1.0 1,124,436 - Echvi_0972 0.31 -2.3 1,124,436 - Echvi_0972 0.31 -0.3 1,124,436 - Echvi_0972 0.31 -0.5 1,124,460 + Echvi_0972 0.34 -0.5 1,124,461 - Echvi_0972 0.35 -1.5 1,124,480 + Echvi_0972 0.37 -0.5 1,124,480 + Echvi_0972 0.37 -0.4 1,124,481 - Echvi_0972 0.37 +0.7 1,124,481 - Echvi_0972 0.37 +1.9 1,124,481 - Echvi_0972 0.37 -0.5 1,124,503 + Echvi_0972 0.41 -1.8 1,124,503 + Echvi_0972 0.41 +0.9 1,124,504 - Echvi_0972 0.41 +0.2 1,124,504 - Echvi_0972 0.41 +0.6 1,124,562 - Echvi_0972 0.49 -0.3 1,124,581 - Echvi_0972 0.52 +2.1 1,124,581 - Echvi_0972 0.52 -0.6 1,124,610 + Echvi_0972 0.56 +0.5 1,124,654 + Echvi_0972 0.62 +0.5 1,124,654 + Echvi_0972 0.62 -0.0 1,124,654 + Echvi_0972 0.62 +0.0 1,124,655 - Echvi_0972 0.62 -2.2 1,124,658 + Echvi_0972 0.63 +0.4 1,124,658 + Echvi_0972 0.63 -1.2 1,124,658 + Echvi_0972 0.63 -1.0 1,124,658 + Echvi_0972 0.63 -0.3 1,124,659 - Echvi_0972 0.63 -1.2 1,124,665 + Echvi_0972 0.64 -0.1 1,124,665 + Echvi_0972 0.64 +0.9 1,124,665 + Echvi_0972 0.64 -1.7 1,124,665 + Echvi_0972 0.64 -0.9 1,124,665 + Echvi_0972 0.64 -0.5 1,124,669 - Echvi_0972 0.64 -0.7 1,124,678 + Echvi_0972 0.65 -0.3 1,124,706 + Echvi_0972 0.69 -3.1 1,124,713 + Echvi_0972 0.70 -1.6 1,124,713 + Echvi_0972 0.70 -1.0 1,124,713 + Echvi_0972 0.70 +0.4 1,124,713 + Echvi_0972 0.70 -1.2 1,124,714 - Echvi_0972 0.70 +0.1 1,124,727 + Echvi_0972 0.72 +0.3 1,124,727 + Echvi_0972 0.72 -0.3 1,124,728 - Echvi_0972 0.72 -1.1 1,124,732 + Echvi_0972 0.73 -0.8 1,124,783 + Echvi_0972 0.80 -0.0 1,124,783 + Echvi_0972 0.80 -2.4 1,124,783 + Echvi_0972 0.80 -1.6 1,124,783 + Echvi_0972 0.80 -0.6 1,124,783 + Echvi_0972 0.80 -0.4 1,124,784 - Echvi_0972 0.80 -0.9 1,124,803 - Echvi_0972 0.83 +1.0 1,124,803 - Echvi_0972 0.83 -1.2 1,124,803 - Echvi_0972 0.83 +1.1 1,124,815 + Echvi_0972 0.85 +1.1 1,124,816 - Echvi_0972 0.85 -0.5 1,124,823 - Echvi_0972 0.86 -0.8 1,124,823 - Echvi_0972 0.86 +0.9 1,124,824 + Echvi_0972 0.86 +0.3 1,124,825 - Echvi_0972 0.86 -0.4 1,124,856 + -0.1 1,124,856 + +0.7 1,124,857 - -0.9 1,124,857 - -0.8 1,124,857 - +0.2 1,124,904 - -0.9 1,124,930 + -2.4 1,124,930 + -1.0 1,124,930 + +0.2 1,124,931 - +1.3 1,124,931 - -0.8 1,124,931 - +0.2 1,124,931 - +0.1 1,124,935 + +0.3 1,124,999 - +0.9 1,125,016 + +0.6 1,125,040 - +0.6 1,125,083 + +0.1 1,125,084 - -0.6 1,125,084 - +0.3 1,125,105 + -0.4 1,125,105 + +2.3 1,125,105 + +0.5 1,125,105 + +0.7 1,125,106 - -1.4 1,125,113 + -1.4 1,125,228 + +0.8 1,125,228 + -0.1 1,125,229 - -1.5 1,125,229 - -0.5 1,125,229 - +0.5 1,125,229 - +0.2 1,125,247 + -1.7 1,125,269 + -1.6 1,125,292 - +0.4 1,125,292 - -0.9 1,125,305 - +0.4 1,125,305 - -0.1 1,125,322 - -1.9 1,125,374 + +0.7 1,125,374 + -0.5 1,125,374 + -0.8 1,125,374 + +0.3 1,125,374 + +0.4 1,125,375 - -1.4 1,125,375 - +0.2 1,125,378 + -1.0 1,125,379 - -2.3 1,125,379 - +0.1 1,125,384 - -0.0 1,125,384 - +0.0 1,125,425 + Echvi_0973 0.14 +2.0 1,125,426 - Echvi_0973 0.14 -1.1 1,125,426 - Echvi_0973 0.14 -0.0 1,125,429 + Echvi_0973 0.14 -1.0 1,125,429 + Echvi_0973 0.14 +0.4 1,125,430 - Echvi_0973 0.15 -0.0 1,125,438 + Echvi_0973 0.17 -0.0 1,125,438 + Echvi_0973 0.17 +0.6 1,125,478 + Echvi_0973 0.26 -0.3 1,125,483 + Echvi_0973 0.28 -0.4 1,125,484 - Echvi_0973 0.28 -0.9 1,125,484 - Echvi_0973 0.28 -2.2 1,125,591 - Echvi_0973 0.54 -0.7 1,125,591 - Echvi_0973 0.54 -1.0 1,125,652 + Echvi_0973 0.68 -0.2 1,125,652 + Echvi_0973 0.68 -0.4 1,125,742 + +0.2 1,125,743 - +0.3 1,125,780 + -1.0 1,125,780 + -0.5 1,125,819 - -1.0 1,125,826 - +0.5 1,125,835 + -1.3 1,125,853 + +0.0 1,125,853 + +0.5 1,125,853 + +1.1 1,125,854 - +1.3 1,125,854 - -0.9 1,125,854 - +0.2 1,125,882 + -2.0 1,125,882 + +0.3 1,125,882 + -0.1 1,125,883 - +0.4
Or see this region's nucleotide sequence