Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0706

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0704 and Echvi_0705 are separated by 122 nucleotidesEchvi_0705 and Echvi_0706 are separated by 99 nucleotidesEchvi_0706 and Echvi_0707 are separated by 102 nucleotidesEchvi_0707 and Echvi_0708 are separated by 5 nucleotides Echvi_0704: Echvi_0704 - hypothetical protein, at 796,670 to 797,131 _0704 Echvi_0705: Echvi_0705 - hypothetical protein, at 797,254 to 797,748 _0705 Echvi_0706: Echvi_0706 - hypothetical protein, at 797,848 to 797,946 _0706 Echvi_0707: Echvi_0707 - Uncharacterized protein conserved in bacteria, at 798,049 to 798,519 _0707 Echvi_0708: Echvi_0708 - transcription termination factor NusA, at 798,525 to 799,772 _0708 Position (kb) 797 798Strain fitness (log2 ratio) -2 -1 0 1 2at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.931 kb on - strand, within Echvi_0704at 796.931 kb on - strand, within Echvi_0704at 796.936 kb on + strand, within Echvi_0704at 796.979 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.091 kb on - strandat 797.094 kb on + strandat 797.107 kb on + strandat 797.110 kb on + strandat 797.110 kb on + strandat 797.111 kb on - strandat 797.111 kb on - strandat 797.120 kb on - strandat 797.188 kb on - strandat 797.196 kb on + strandat 797.196 kb on + strandat 797.205 kb on + strandat 797.206 kb on - strandat 797.217 kb on + strandat 797.228 kb on + strandat 797.228 kb on + strandat 797.230 kb on + strandat 797.237 kb on + strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.277 kb on + strandat 797.314 kb on + strand, within Echvi_0705at 797.315 kb on - strand, within Echvi_0705at 797.344 kb on + strand, within Echvi_0705at 797.344 kb on + strand, within Echvi_0705at 797.345 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.352 kb on + strand, within Echvi_0705at 797.353 kb on - strand, within Echvi_0705at 797.362 kb on - strand, within Echvi_0705at 797.377 kb on - strand, within Echvi_0705at 797.393 kb on + strand, within Echvi_0705at 797.393 kb on + strand, within Echvi_0705at 797.409 kb on - strand, within Echvi_0705at 797.435 kb on + strand, within Echvi_0705at 797.435 kb on + strand, within Echvi_0705at 797.436 kb on - strand, within Echvi_0705at 797.436 kb on - strand, within Echvi_0705at 797.441 kb on - strand, within Echvi_0705at 797.461 kb on - strand, within Echvi_0705at 797.564 kb on + strand, within Echvi_0705at 797.570 kb on + strand, within Echvi_0705at 797.570 kb on + strand, within Echvi_0705at 797.571 kb on - strand, within Echvi_0705at 797.571 kb on - strand, within Echvi_0705at 797.571 kb on - strand, within Echvi_0705at 797.594 kb on + strand, within Echvi_0705at 797.594 kb on + strand, within Echvi_0705at 797.595 kb on - strand, within Echvi_0705at 797.608 kb on + strand, within Echvi_0705at 797.658 kb on - strand, within Echvi_0705at 797.658 kb on - strand, within Echvi_0705at 797.658 kb on - strand, within Echvi_0705at 797.708 kb on - strandat 797.717 kb on + strandat 797.723 kb on + strandat 797.723 kb on + strandat 797.724 kb on - strandat 797.724 kb on - strandat 797.724 kb on - strandat 797.724 kb on - strandat 797.724 kb on - strandat 797.747 kb on - strandat 797.823 kb on - strandat 797.946 kb on + strandat 797.950 kb on + strandat 797.993 kb on + strandat 798.035 kb on + strandat 798.035 kb on + strandat 798.039 kb on + strandat 798.039 kb on + strandat 798.204 kb on + strand, within Echvi_0707at 798.262 kb on + strand, within Echvi_0707

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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796,864 + Echvi_0704 0.42 +0.1
796,864 + Echvi_0704 0.42 -0.1
796,864 + Echvi_0704 0.42 +0.2
796,864 + Echvi_0704 0.42 -0.9
796,927 + Echvi_0704 0.56 -1.7
796,927 + Echvi_0704 0.56 +0.5
796,927 + Echvi_0704 0.56 -0.7
796,927 + Echvi_0704 0.56 -0.3
796,931 - Echvi_0704 0.56 +0.2
796,931 - Echvi_0704 0.56 -2.3
796,936 + Echvi_0704 0.58 +2.5
796,979 - Echvi_0704 0.67 +0.9
797,003 - Echvi_0704 0.72 +0.0
797,003 - Echvi_0704 0.72 -0.1
797,003 - Echvi_0704 0.72 -0.4
797,091 - +0.4
797,094 + +0.4
797,107 + -0.7
797,110 + +0.4
797,110 + +1.0
797,111 - +0.7
797,111 - -1.0
797,120 - -0.7
797,188 - +0.1
797,196 + +0.5
797,196 + -0.3
797,205 + +0.2
797,206 - -1.5
797,217 + +0.0
797,228 + +0.4
797,228 + -0.2
797,230 + +0.1
797,237 + +0.0
797,238 - -0.1
797,238 - -0.8
797,238 - -1.9
797,238 - +0.5
797,238 - -0.6
797,238 - +1.6
797,277 + -0.6
797,314 + Echvi_0705 0.12 -0.4
797,315 - Echvi_0705 0.12 -0.1
797,344 + Echvi_0705 0.18 -0.9
797,344 + Echvi_0705 0.18 +0.6
797,345 - Echvi_0705 0.18 -1.6
797,347 - Echvi_0705 0.19 +0.4
797,347 - Echvi_0705 0.19 +1.2
797,347 - Echvi_0705 0.19 +0.1
797,352 + Echvi_0705 0.20 +0.4
797,353 - Echvi_0705 0.20 -0.1
797,362 - Echvi_0705 0.22 +0.2
797,377 - Echvi_0705 0.25 +0.7
797,393 + Echvi_0705 0.28 +0.8
797,393 + Echvi_0705 0.28 +1.6
797,409 - Echvi_0705 0.31 -1.2
797,435 + Echvi_0705 0.37 -2.0
797,435 + Echvi_0705 0.37 -0.2
797,436 - Echvi_0705 0.37 +0.7
797,436 - Echvi_0705 0.37 +0.1
797,441 - Echvi_0705 0.38 +0.0
797,461 - Echvi_0705 0.42 -0.6
797,564 + Echvi_0705 0.63 +0.2
797,570 + Echvi_0705 0.64 -1.2
797,570 + Echvi_0705 0.64 -0.4
797,571 - Echvi_0705 0.64 +2.6
797,571 - Echvi_0705 0.64 +1.0
797,571 - Echvi_0705 0.64 -0.3
797,594 + Echvi_0705 0.69 +2.0
797,594 + Echvi_0705 0.69 -0.1
797,595 - Echvi_0705 0.69 -2.0
797,608 + Echvi_0705 0.72 -0.2
797,658 - Echvi_0705 0.82 +0.1
797,658 - Echvi_0705 0.82 -1.1
797,658 - Echvi_0705 0.82 +0.1
797,708 - +0.0
797,717 + +1.5
797,723 + +1.5
797,723 + +0.7
797,724 - -2.0
797,724 - -0.3
797,724 - -0.6
797,724 - -0.1
797,724 - -0.6
797,747 - +0.7
797,823 - -1.2
797,946 + +0.6
797,950 + -0.8
797,993 + +0.1
798,035 + +1.1
798,035 + -0.1
798,039 + +2.2
798,039 + +1.0
798,204 + Echvi_0707 0.33 -1.2
798,262 + Echvi_0707 0.45 -0.8

Or see this region's nucleotide sequence