Strain Fitness in Agrobacterium fabrum C58 around Atu5517

Experiment: L-Ornithine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5516 and Atu5517 are separated by 367 nucleotidesAtu5517 and Atu5518 are separated by 35 nucleotides Atu5516: Atu5516 - hypothetical protein, at 507,596 to 508,975 Atu5516 Atu5517: Atu5517 - hypothetical protein, at 509,343 to 509,603 Atu5517 Atu5518: Atu5518 - hypothetical protein, at 509,639 to 511,147 Atu5518 Position (kb) 509 510Strain fitness (log2 ratio) -1 0 1 2 3at 508.390 kb on - strand, within Atu5516at 508.392 kb on + strand, within Atu5516at 508.423 kb on - strand, within Atu5516at 508.505 kb on + strand, within Atu5516at 508.533 kb on + strand, within Atu5516at 508.548 kb on + strand, within Atu5516at 508.556 kb on - strand, within Atu5516at 508.556 kb on - strand, within Atu5516at 508.603 kb on + strand, within Atu5516at 508.608 kb on + strand, within Atu5516at 508.608 kb on + strand, within Atu5516at 508.608 kb on + strand, within Atu5516at 508.611 kb on - strand, within Atu5516at 508.616 kb on - strand, within Atu5516at 508.616 kb on - strand, within Atu5516at 508.616 kb on - strand, within Atu5516at 508.641 kb on - strand, within Atu5516at 508.647 kb on + strand, within Atu5516at 508.720 kb on + strand, within Atu5516at 508.758 kb on + strand, within Atu5516at 508.813 kb on + strand, within Atu5516at 508.831 kb on - strand, within Atu5516at 508.886 kb on + strandat 509.034 kb on + strandat 509.184 kb on + strandat 509.204 kb on + strandat 509.241 kb on + strandat 509.321 kb on - strandat 509.341 kb on + strandat 509.356 kb on - strandat 509.396 kb on + strand, within Atu5517at 509.529 kb on + strand, within Atu5517at 509.552 kb on + strand, within Atu5517at 509.562 kb on - strand, within Atu5517at 509.591 kb on + strandat 509.591 kb on + strandat 509.591 kb on + strandat 509.599 kb on - strandat 509.599 kb on - strandat 509.599 kb on - strandat 509.599 kb on - strandat 509.712 kb on + strandat 509.733 kb on + strandat 509.812 kb on + strand, within Atu5518at 509.815 kb on + strand, within Atu5518at 509.815 kb on + strand, within Atu5518at 509.823 kb on - strand, within Atu5518at 509.854 kb on + strand, within Atu5518at 509.870 kb on + strand, within Atu5518at 509.939 kb on - strand, within Atu5518at 510.004 kb on - strand, within Atu5518at 510.011 kb on + strand, within Atu5518at 510.037 kb on - strand, within Atu5518at 510.159 kb on - strand, within Atu5518at 510.193 kb on + strand, within Atu5518at 510.206 kb on - strand, within Atu5518at 510.233 kb on + strand, within Atu5518at 510.277 kb on - strand, within Atu5518at 510.277 kb on - strand, within Atu5518at 510.319 kb on + strand, within Atu5518at 510.319 kb on + strand, within Atu5518at 510.369 kb on + strand, within Atu5518at 510.379 kb on - strand, within Atu5518at 510.410 kb on - strand, within Atu5518at 510.418 kb on + strand, within Atu5518at 510.426 kb on - strand, within Atu5518at 510.426 kb on - strand, within Atu5518at 510.442 kb on - strand, within Atu5518at 510.451 kb on + strand, within Atu5518at 510.456 kb on + strand, within Atu5518at 510.474 kb on - strand, within Atu5518at 510.553 kb on + strand, within Atu5518

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
remove
508,390 - Atu5516 0.58 +0.6
508,392 + Atu5516 0.58 +0.7
508,423 - Atu5516 0.60 +0.6
508,505 + Atu5516 0.66 +0.1
508,533 + Atu5516 0.68 +3.0
508,548 + Atu5516 0.69 -0.2
508,556 - Atu5516 0.70 -0.1
508,556 - Atu5516 0.70 -0.3
508,603 + Atu5516 0.73 +0.9
508,608 + Atu5516 0.73 +2.2
508,608 + Atu5516 0.73 +0.7
508,608 + Atu5516 0.73 -0.6
508,611 - Atu5516 0.74 +1.6
508,616 - Atu5516 0.74 -0.4
508,616 - Atu5516 0.74 -0.9
508,616 - Atu5516 0.74 +0.2
508,641 - Atu5516 0.76 +0.1
508,647 + Atu5516 0.76 +0.8
508,720 + Atu5516 0.81 -0.3
508,758 + Atu5516 0.84 +1.5
508,813 + Atu5516 0.88 +1.7
508,831 - Atu5516 0.89 -0.5
508,886 + +0.7
509,034 + -0.2
509,184 + -0.2
509,204 + -0.4
509,241 + +0.7
509,321 - -0.4
509,341 + +0.5
509,356 - -0.4
509,396 + Atu5517 0.20 +0.3
509,529 + Atu5517 0.71 -0.9
509,552 + Atu5517 0.80 -1.1
509,562 - Atu5517 0.84 +0.1
509,591 + -0.6
509,591 + +1.5
509,591 + +0.2
509,599 - -0.3
509,599 - -0.2
509,599 - +0.1
509,599 - -0.1
509,712 + +2.1
509,733 + +0.6
509,812 + Atu5518 0.11 +1.8
509,815 + Atu5518 0.12 +1.5
509,815 + Atu5518 0.12 +0.7
509,823 - Atu5518 0.12 +0.1
509,854 + Atu5518 0.14 -0.4
509,870 + Atu5518 0.15 +2.1
509,939 - Atu5518 0.20 -0.4
510,004 - Atu5518 0.24 -1.5
510,011 + Atu5518 0.25 -1.0
510,037 - Atu5518 0.26 -0.2
510,159 - Atu5518 0.34 +1.7
510,193 + Atu5518 0.37 -0.7
510,206 - Atu5518 0.38 -0.1
510,233 + Atu5518 0.39 +2.2
510,277 - Atu5518 0.42 -0.7
510,277 - Atu5518 0.42 -0.7
510,319 + Atu5518 0.45 -0.2
510,319 + Atu5518 0.45 -0.7
510,369 + Atu5518 0.48 +1.3
510,379 - Atu5518 0.49 +0.9
510,410 - Atu5518 0.51 +2.0
510,418 + Atu5518 0.52 -0.3
510,426 - Atu5518 0.52 -0.7
510,426 - Atu5518 0.52 +0.9
510,442 - Atu5518 0.53 -0.0
510,451 + Atu5518 0.54 -0.6
510,456 + Atu5518 0.54 +0.6
510,474 - Atu5518 0.55 -1.5
510,553 + Atu5518 0.61 -0.1

Or see this region's nucleotide sequence