Strain Fitness in Pseudomonas simiae WCS417 around PS417_02935

Experiment: 2-Furfuraldehyde 0.03 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02930 and PS417_02935 are separated by 100 nucleotidesPS417_02935 and PS417_02940 are separated by 174 nucleotides PS417_02930: PS417_02930 - histidine kinase, at 667,917 to 670,688 _02930 PS417_02935: PS417_02935 - phosphoribosylamine--glycine ligase, at 670,789 to 672,081 _02935 PS417_02940: PS417_02940 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 672,256 to 673,863 _02940 Position (kb) 670 671 672 673Strain fitness (log2 ratio) -1 0 1at 670.704 kb on + strandat 670.705 kb on - strandat 670.705 kb on - strandat 670.705 kb on - strandat 670.705 kb on - strandat 670.721 kb on - strandat 670.724 kb on + strandat 670.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol%
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670,704 + +0.2
670,705 - -1.1
670,705 - -0.4
670,705 - -0.1
670,705 - +0.2
670,721 - -0.4
670,724 + -0.6
670,725 - +1.5

Or see this region's nucleotide sequence