Strain Fitness in Pseudomonas simiae WCS417 around PS417_23380
Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.03 vol% |
---|---|---|---|---|---|
remove | |||||
5,059,565 | + | PS417_23370 | 0.47 | -1.0 | |
5,059,583 | - | PS417_23370 | 0.49 | -1.6 | |
5,059,675 | + | PS417_23370 | 0.60 | -1.8 | |
5,059,676 | - | PS417_23370 | 0.60 | -0.5 | |
5,059,676 | - | PS417_23370 | 0.60 | -2.0 | |
5,059,884 | + | PS417_23370 | 0.83 | +0.8 | |
5,060,065 | + | +1.8 | |||
5,060,184 | + | PS417_23375 | 0.41 | -1.8 | |
5,060,263 | - | PS417_23375 | 0.64 | -2.7 | |
5,060,516 | + | PS417_23380 | 0.21 | -0.8 | |
5,060,516 | + | PS417_23380 | 0.21 | +0.4 | |
5,060,517 | - | PS417_23380 | 0.21 | -1.7 | |
5,060,730 | - | PS417_23380 | 0.55 | -0.8 | |
5,060,861 | + | PS417_23380 | 0.76 | +0.8 | |
5,060,906 | + | PS417_23380 | 0.83 | -0.3 | |
5,061,002 | - | -0.3 | |||
5,061,485 | + | PS417_23385 | 0.23 | -1.5 | |
5,061,579 | + | PS417_23385 | 0.28 | -1.8 | |
5,061,620 | + | PS417_23385 | 0.30 | -0.3 | |
5,061,720 | - | PS417_23385 | 0.35 | +0.1 | |
5,061,924 | - | PS417_23385 | 0.45 | -1.5 | |
5,061,924 | - | PS417_23385 | 0.45 | -1.3 |
Or see this region's nucleotide sequence