Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22370 and PS417_22375 are separated by 393 nucleotides PS417_22375 and PS417_22380 are separated by 95 nucleotides PS417_22380 and PS417_22385 are separated by 72 nucleotides
PS417_22370: PS417_22370 - Aminomethyltransferase (EC 2.1.2.10) (from data) , at 4,847,946 to 4,849,070
_22370
PS417_22375: PS417_22375 - cold-shock protein, at 4,849,464 to 4,849,676
_22375
PS417_22380: PS417_22380 - hypothetical protein, at 4,849,772 to 4,850,260
_22380
PS417_22385: PS417_22385 - quinolinate synthase A, at 4,850,333 to 4,851,391
_22385
Position (kb)
4849
4850
4851 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4848.821 kb on - strand, within PS417_22370 at 4848.951 kb on + strand, within PS417_22370 at 4849.027 kb on + strand at 4849.028 kb on - strand at 4849.028 kb on - strand at 4849.031 kb on + strand at 4849.057 kb on - strand at 4849.085 kb on - strand at 4849.088 kb on + strand at 4849.176 kb on + strand at 4849.176 kb on + strand at 4849.177 kb on - strand at 4849.235 kb on + strand at 4849.293 kb on + strand at 4849.347 kb on - strand at 4849.355 kb on + strand at 4849.355 kb on + strand at 4849.355 kb on + strand at 4849.356 kb on - strand at 4849.356 kb on - strand at 4849.356 kb on - strand at 4849.356 kb on - strand at 4849.364 kb on + strand at 4849.364 kb on + strand at 4849.364 kb on + strand at 4849.364 kb on + strand at 4849.364 kb on + strand at 4849.364 kb on + strand at 4849.365 kb on - strand at 4849.365 kb on - strand at 4849.365 kb on - strand at 4849.385 kb on + strand at 4849.457 kb on + strand at 4849.523 kb on + strand, within PS417_22375 at 4849.660 kb on + strand at 4849.724 kb on + strand at 4849.740 kb on + strand at 4849.740 kb on + strand at 4849.847 kb on + strand, within PS417_22380 at 4849.847 kb on + strand, within PS417_22380 at 4849.848 kb on - strand, within PS417_22380 at 4849.895 kb on + strand, within PS417_22380 at 4850.170 kb on + strand, within PS417_22380 at 4850.216 kb on + strand at 4850.216 kb on + strand at 4850.258 kb on + strand at 4850.440 kb on + strand, within PS417_22385 at 4850.440 kb on + strand, within PS417_22385 at 4850.441 kb on - strand, within PS417_22385 at 4850.670 kb on - strand, within PS417_22385 at 4850.670 kb on - strand, within PS417_22385 at 4850.670 kb on - strand, within PS417_22385 at 4850.838 kb on + strand, within PS417_22385 at 4850.838 kb on + strand, within PS417_22385 at 4850.839 kb on - strand, within PS417_22385 at 4850.839 kb on - strand, within PS417_22385 at 4850.839 kb on - strand, within PS417_22385 at 4850.839 kb on - strand, within PS417_22385 at 4850.869 kb on + strand, within PS417_22385 at 4850.973 kb on + strand, within PS417_22385 at 4850.973 kb on + strand, within PS417_22385 at 4850.973 kb on + strand, within PS417_22385 at 4850.973 kb on + strand, within PS417_22385 at 4850.974 kb on - strand, within PS417_22385 at 4850.974 kb on - strand, within PS417_22385 at 4851.243 kb on + strand, within PS417_22385 at 4851.243 kb on + strand, within PS417_22385 at 4851.243 kb on + strand, within PS417_22385 at 4851.244 kb on - strand, within PS417_22385 at 4851.244 kb on - strand, within PS417_22385
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol% remove 4,848,821 - PS417_22370 0.78 -0.9 4,848,951 + PS417_22370 0.89 +2.6 4,849,027 + +0.0 4,849,028 - -0.3 4,849,028 - +0.1 4,849,031 + -0.0 4,849,057 - -0.6 4,849,085 - +0.7 4,849,088 + -1.6 4,849,176 + -2.2 4,849,176 + +0.4 4,849,177 - -0.3 4,849,235 + +0.6 4,849,293 + +0.2 4,849,347 - -0.0 4,849,355 + +0.1 4,849,355 + -0.1 4,849,355 + +0.1 4,849,356 - +0.1 4,849,356 - -0.3 4,849,356 - -0.3 4,849,356 - -0.9 4,849,364 + +0.1 4,849,364 + +0.4 4,849,364 + -0.8 4,849,364 + -0.2 4,849,364 + -0.1 4,849,364 + +0.0 4,849,365 - -0.5 4,849,365 - -0.2 4,849,365 - -1.0 4,849,385 + -0.3 4,849,457 + -0.9 4,849,523 + PS417_22375 0.28 -0.4 4,849,660 + -1.1 4,849,724 + -0.1 4,849,740 + +0.3 4,849,740 + +0.1 4,849,847 + PS417_22380 0.15 -0.3 4,849,847 + PS417_22380 0.15 -1.1 4,849,848 - PS417_22380 0.16 +0.3 4,849,895 + PS417_22380 0.25 -2.3 4,850,170 + PS417_22380 0.81 -0.6 4,850,216 + +0.9 4,850,216 + -1.9 4,850,258 + -1.5 4,850,440 + PS417_22385 0.10 -1.4 4,850,440 + PS417_22385 0.10 -0.2 4,850,441 - PS417_22385 0.10 -0.1 4,850,670 - PS417_22385 0.32 +0.1 4,850,670 - PS417_22385 0.32 -0.0 4,850,670 - PS417_22385 0.32 -0.3 4,850,838 + PS417_22385 0.48 -1.1 4,850,838 + PS417_22385 0.48 -0.5 4,850,839 - PS417_22385 0.48 -0.0 4,850,839 - PS417_22385 0.48 +1.4 4,850,839 - PS417_22385 0.48 -0.1 4,850,839 - PS417_22385 0.48 +0.2 4,850,869 + PS417_22385 0.51 -0.0 4,850,973 + PS417_22385 0.60 -0.4 4,850,973 + PS417_22385 0.60 -0.2 4,850,973 + PS417_22385 0.60 -0.5 4,850,973 + PS417_22385 0.60 -0.0 4,850,974 - PS417_22385 0.61 -0.0 4,850,974 - PS417_22385 0.61 +0.7 4,851,243 + PS417_22385 0.86 -0.8 4,851,243 + PS417_22385 0.86 +0.2 4,851,243 + PS417_22385 0.86 -0.3 4,851,244 - PS417_22385 0.86 -0.2 4,851,244 - PS417_22385 0.86 +0.1
Or see this region's nucleotide sequence