Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21840 and PS417_21845 are separated by 75 nucleotides PS417_21845 and PS417_21850 overlap by 4 nucleotides PS417_21850 and PS417_21855 are separated by 80 nucleotides PS417_21855 and PS417_21860 overlap by 4 nucleotides
PS417_21840: PS417_21840 - chemotaxis protein, at 4,742,540 to 4,743,859
_21840
PS417_21845: PS417_21845 - membrane protein, at 4,743,935 to 4,744,453
_21845
PS417_21850: PS417_21850 - LysR family transcriptional regulator, at 4,744,450 to 4,745,328
_21850
PS417_21855: PS417_21855 - hypothetical protein, at 4,745,409 to 4,746,110
_21855
PS417_21860: PS417_21860 - hypothetical protein, at 4,746,107 to 4,746,430
_21860
Position (kb)
4744
4745
4746 Strain fitness (log2 ratio)
-1
0
1 at 4743.894 kb on + strand at 4743.894 kb on + strand at 4743.894 kb on + strand at 4743.895 kb on - strand at 4743.895 kb on - strand at 4743.896 kb on + strand at 4744.073 kb on - strand, within PS417_21845 at 4744.341 kb on + strand, within PS417_21845 at 4744.342 kb on - strand, within PS417_21845 at 4744.451 kb on + strand at 4744.818 kb on - strand, within PS417_21850 at 4745.306 kb on + strand at 4745.367 kb on + strand at 4745.367 kb on + strand at 4745.367 kb on + strand at 4745.396 kb on + strand at 4745.403 kb on + strand at 4745.403 kb on + strand at 4745.403 kb on + strand at 4745.404 kb on - strand at 4745.404 kb on - strand at 4745.404 kb on - strand at 4745.448 kb on + strand at 4745.530 kb on + strand, within PS417_21855 at 4745.608 kb on - strand, within PS417_21855 at 4745.860 kb on - strand, within PS417_21855 at 4745.978 kb on - strand at 4746.134 kb on + strand at 4746.134 kb on + strand at 4746.135 kb on - strand at 4746.135 kb on - strand at 4746.138 kb on - strand at 4746.138 kb on - strand at 4746.148 kb on - strand, within PS417_21860
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol% remove 4,743,894 + +0.7 4,743,894 + +0.4 4,743,894 + +0.2 4,743,895 - +0.3 4,743,895 - +0.2 4,743,896 + -0.4 4,744,073 - PS417_21845 0.27 +0.1 4,744,341 + PS417_21845 0.78 -0.1 4,744,342 - PS417_21845 0.78 -0.4 4,744,451 + +0.2 4,744,818 - PS417_21850 0.42 -0.6 4,745,306 + -0.1 4,745,367 + -0.7 4,745,367 + +0.1 4,745,367 + +0.5 4,745,396 + -0.6 4,745,403 + +1.0 4,745,403 + +0.7 4,745,403 + -0.6 4,745,404 - -0.5 4,745,404 - -1.3 4,745,404 - -1.4 4,745,448 + -0.2 4,745,530 + PS417_21855 0.17 -0.4 4,745,608 - PS417_21855 0.28 -0.8 4,745,860 - PS417_21855 0.64 +0.1 4,745,978 - -1.1 4,746,134 + -0.3 4,746,134 + -0.1 4,746,135 - +0.6 4,746,135 - -0.2 4,746,138 - -0.2 4,746,138 - -0.2 4,746,148 - PS417_21860 0.13 -0.0
Or see this region's nucleotide sequence