Strain Fitness in Pseudomonas simiae WCS417 around PS417_16885
Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.03 vol% |
---|---|---|---|---|---|
remove | |||||
3,679,309 | + | +1.3 | |||
3,679,310 | - | -0.3 | |||
3,679,515 | + | PS417_16880 | 0.16 | +0.3 | |
3,679,516 | - | PS417_16880 | 0.17 | -0.7 | |
3,679,755 | - | PS417_16880 | 0.59 | +0.3 | |
3,679,767 | + | -0.7 | |||
3,679,767 | + | +2.3 | |||
3,679,767 | + | PS417_16880 | 0.61 | -0.1 | |
3,679,767 | + | PS417_16880 | 0.61 | +0.7 | |
3,679,862 | + | PS417_16880 | 0.78 | +1.3 | |
3,679,863 | - | PS417_16880 | 0.78 | -0.4 | |
3,679,917 | + | PS417_16880 | 0.88 | +0.3 | |
3,679,917 | + | PS417_16880 | 0.88 | +0.2 | |
3,679,918 | - | PS417_16880 | 0.88 | +0.0 | |
3,679,951 | - | -0.1 | |||
3,680,016 | - | -0.9 | |||
3,680,116 | - | PS417_16885 | 0.16 | -0.1 | |
3,680,195 | - | PS417_16885 | 0.28 | -0.9 | |
3,680,274 | + | PS417_16885 | 0.39 | -1.5 | |
3,680,278 | + | PS417_16885 | 0.40 | -0.6 | |
3,680,545 | + | PS417_16885 | 0.78 | -1.9 | |
3,680,597 | + | -0.3 | |||
3,680,597 | + | PS417_16885 | 0.85 | -1.2 | |
3,680,597 | + | +0.3 | |||
3,680,601 | + | PS417_16885 | 0.86 | +0.5 | |
3,680,633 | + | +0.7 | |||
3,680,642 | + | +0.5 | |||
3,680,668 | + | -1.1 | |||
3,680,668 | + | -0.0 | |||
3,680,668 | + | +0.0 | |||
3,680,669 | - | +0.1 | |||
3,680,678 | - | +0.3 | |||
3,680,805 | - | +0.1 | |||
3,680,815 | - | -0.5 | |||
3,680,852 | - | -0.5 | |||
3,680,986 | + | -0.2 | |||
3,681,053 | - | -0.5 |
Or see this region's nucleotide sequence