Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16630 and PS417_16635 are separated by 7 nucleotides PS417_16635 and PS417_16640 are separated by 187 nucleotides PS417_16640 and PS417_16645 overlap by 11 nucleotides PS417_16645 and PS417_16650 are separated by 61 nucleotides
PS417_16630: PS417_16630 - NADH:ubiquinone oxidoreductase subunit M, at 3,634,550 to 3,636,082
_16630
PS417_16635: PS417_16635 - NADH:ubiquinone oxidoreductase subunit N, at 3,636,090 to 3,637,553
_16635
PS417_16640: PS417_16640 - toxin, at 3,637,741 to 3,638,142
_16640
PS417_16645: PS417_16645 - XRE family transcriptional regulator, at 3,638,132 to 3,638,446
_16645
PS417_16650: PS417_16650 - hypothetical protein, at 3,638,508 to 3,639,260
_16650
Position (kb)
3636
3637
3638 Strain fitness (log2 ratio)
-1
0
1 at 3637.700 kb on - strand at 3637.715 kb on + strand at 3637.802 kb on + strand, within PS417_16640 at 3637.802 kb on + strand, within PS417_16640 at 3637.803 kb on - strand, within PS417_16640 at 3637.807 kb on - strand, within PS417_16640 at 3637.843 kb on + strand, within PS417_16640 at 3637.997 kb on - strand, within PS417_16640 at 3638.312 kb on + strand, within PS417_16645 at 3638.312 kb on + strand, within PS417_16645 at 3638.313 kb on - strand, within PS417_16645 at 3638.313 kb on - strand, within PS417_16645
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol% remove 3,637,700 - -0.0 3,637,715 + -0.5 3,637,802 + PS417_16640 0.15 +0.8 3,637,802 + PS417_16640 0.15 +0.2 3,637,803 - PS417_16640 0.15 -0.5 3,637,807 - PS417_16640 0.16 +0.9 3,637,843 + PS417_16640 0.25 -0.1 3,637,997 - PS417_16640 0.64 -0.1 3,638,312 + PS417_16645 0.57 +0.5 3,638,312 + PS417_16645 0.57 -1.1 3,638,313 - PS417_16645 0.57 -0.6 3,638,313 - PS417_16645 0.57 -0.3
Or see this region's nucleotide sequence