Strain Fitness in Pseudomonas simiae WCS417 around PS417_16530

Experiment: 2-Furfuraldehyde 0.03 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16525 and PS417_16530 are separated by 493 nucleotidesPS417_16530 and PS417_16535 are separated by 226 nucleotidesPS417_16535 and PS417_16540 are separated by 59 nucleotides PS417_16525: PS417_16525 - isocitrate dehydrogenase, at 3,609,560 to 3,610,816 _16525 PS417_16530: PS417_16530 - isocitrate dehydrogenase, at 3,611,310 to 3,613,535 _16530 PS417_16535: PS417_16535 - NUDIX hydrolase, at 3,613,762 to 3,614,208 _16535 PS417_16540: PS417_16540 - tRNA 2-thiouridylase, at 3,614,268 to 3,615,392 _16540 Position (kb) 3611 3612 3613 3614Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3610.332 kb on + strand, within PS417_16525at 3610.333 kb on - strand, within PS417_16525at 3610.396 kb on + strand, within PS417_16525at 3610.437 kb on + strand, within PS417_16525at 3610.437 kb on + strand, within PS417_16525at 3610.438 kb on - strand, within PS417_16525at 3610.464 kb on - strand, within PS417_16525at 3610.527 kb on + strand, within PS417_16525at 3610.605 kb on + strand, within PS417_16525at 3610.606 kb on - strand, within PS417_16525at 3610.606 kb on - strand, within PS417_16525at 3610.606 kb on - strand, within PS417_16525at 3610.606 kb on - strand, within PS417_16525at 3610.641 kb on + strand, within PS417_16525at 3610.719 kb on + strandat 3610.720 kb on - strandat 3610.720 kb on - strandat 3610.720 kb on - strandat 3610.809 kb on + strandat 3610.809 kb on + strandat 3610.809 kb on + strandat 3610.830 kb on + strandat 3610.831 kb on - strandat 3610.831 kb on - strandat 3610.831 kb on - strandat 3610.831 kb on - strandat 3610.831 kb on - strandat 3610.870 kb on + strandat 3610.871 kb on - strandat 3611.013 kb on + strandat 3611.039 kb on + strandat 3611.039 kb on + strandat 3611.040 kb on - strandat 3611.068 kb on + strandat 3611.068 kb on + strandat 3611.068 kb on + strandat 3611.068 kb on + strandat 3611.069 kb on - strandat 3611.069 kb on - strandat 3611.069 kb on - strandat 3611.069 kb on - strandat 3611.069 kb on - strandat 3611.072 kb on + strandat 3611.072 kb on + strandat 3611.072 kb on + strandat 3611.072 kb on + strandat 3611.072 kb on + strandat 3611.073 kb on - strandat 3611.073 kb on - strandat 3611.073 kb on - strandat 3611.073 kb on - strandat 3611.073 kb on - strandat 3611.073 kb on - strandat 3611.073 kb on - strandat 3611.073 kb on - strandat 3611.117 kb on - strandat 3611.148 kb on - strandat 3611.150 kb on + strandat 3611.150 kb on + strandat 3611.150 kb on + strandat 3611.150 kb on + strandat 3611.150 kb on + strandat 3611.151 kb on - strandat 3611.151 kb on - strandat 3611.151 kb on - strandat 3611.156 kb on - strandat 3611.371 kb on - strandat 3611.390 kb on - strandat 3613.453 kb on - strandat 3613.533 kb on + strandat 3613.533 kb on + strandat 3613.534 kb on - strandat 3613.541 kb on + strandat 3613.542 kb on - strandat 3613.672 kb on + strandat 3613.673 kb on - strandat 3613.673 kb on - strandat 3613.673 kb on - strandat 3613.673 kb on - strandat 3613.969 kb on + strand, within PS417_16535at 3613.970 kb on - strand, within PS417_16535at 3613.970 kb on - strand, within PS417_16535at 3613.975 kb on + strand, within PS417_16535at 3614.002 kb on + strandat 3614.050 kb on + strand, within PS417_16535at 3614.207 kb on - strandat 3614.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol%
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3,610,332 + PS417_16525 0.61 -0.4
3,610,333 - PS417_16525 0.61 -0.8
3,610,396 + PS417_16525 0.67 -0.1
3,610,437 + PS417_16525 0.70 -2.8
3,610,437 + PS417_16525 0.70 -0.2
3,610,438 - PS417_16525 0.70 +0.8
3,610,464 - PS417_16525 0.72 -2.1
3,610,527 + PS417_16525 0.77 +0.0
3,610,605 + PS417_16525 0.83 +1.0
3,610,606 - PS417_16525 0.83 -0.5
3,610,606 - PS417_16525 0.83 +0.4
3,610,606 - PS417_16525 0.83 -0.1
3,610,606 - PS417_16525 0.83 -1.3
3,610,641 + PS417_16525 0.86 +0.2
3,610,719 + -0.2
3,610,720 - -0.0
3,610,720 - -0.2
3,610,720 - +0.1
3,610,809 + +0.6
3,610,809 + -0.5
3,610,809 + -0.2
3,610,830 + +0.1
3,610,831 - -0.5
3,610,831 - +0.8
3,610,831 - +0.8
3,610,831 - +1.2
3,610,831 - -1.7
3,610,870 + +0.4
3,610,871 - +1.5
3,611,013 + -0.1
3,611,039 + +1.2
3,611,039 + +0.3
3,611,040 - -0.0
3,611,068 + +0.2
3,611,068 + -1.0
3,611,068 + -0.0
3,611,068 + +2.7
3,611,069 - -0.6
3,611,069 - +0.1
3,611,069 - +0.7
3,611,069 - -0.4
3,611,069 - -0.9
3,611,072 + -0.9
3,611,072 + -0.6
3,611,072 + +0.2
3,611,072 + +1.0
3,611,072 + -0.5
3,611,073 - +0.2
3,611,073 - -0.8
3,611,073 - -1.1
3,611,073 - +1.5
3,611,073 - +0.6
3,611,073 - +0.2
3,611,073 - -0.3
3,611,073 - -0.0
3,611,117 - +0.2
3,611,148 - +0.0
3,611,150 + +0.4
3,611,150 + -0.3
3,611,150 + -1.1
3,611,150 + -1.3
3,611,150 + +0.3
3,611,151 - -0.9
3,611,151 - -0.7
3,611,151 - -0.0
3,611,156 - +0.2
3,611,371 - -1.9
3,611,390 - -1.3
3,613,453 - -0.7
3,613,533 + +0.0
3,613,533 + -0.0
3,613,534 - +0.8
3,613,541 + +0.3
3,613,542 - +0.9
3,613,672 + -0.0
3,613,673 - +0.0
3,613,673 - +0.2
3,613,673 - +0.2
3,613,673 - +0.3
3,613,969 + PS417_16535 0.46 -1.2
3,613,970 - PS417_16535 0.47 -0.5
3,613,970 - PS417_16535 0.47 -0.9
3,613,975 + PS417_16535 0.48 -0.8
3,614,002 + +0.8
3,614,050 + PS417_16535 0.64 -0.5
3,614,207 - -0.5
3,614,267 + -0.7

Or see this region's nucleotide sequence