Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15505 and PS417_15510 are separated by 55 nucleotides PS417_15510 and PS417_15515 are separated by 90 nucleotides PS417_15515 and PS417_15520 are separated by 23 nucleotides PS417_15520 and PS417_15525 are separated by 120 nucleotides
PS417_15505: PS417_15505 - glutaminase, at 3,396,465 to 3,397,373
_15505
PS417_15510: PS417_15510 - hypothetical protein, at 3,397,429 to 3,397,773
_15510
PS417_15515: PS417_15515 - hypothetical protein, at 3,397,864 to 3,398,211
_15515
PS417_15520: PS417_15520 - hypothetical protein, at 3,398,235 to 3,398,645
_15520
PS417_15525: PS417_15525 - AraC family transcriptional regulator, at 3,398,766 to 3,399,632
_15525
Position (kb) 3397
3398 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3396.569 kb on + strand, within PS417_15505 at 3396.569 kb on + strand, within PS417_15505 at 3396.662 kb on - strand, within PS417_15505 at 3396.818 kb on - strand, within PS417_15505 at 3396.818 kb on - strand, within PS417_15505 at 3397.303 kb on + strand at 3397.303 kb on + strand at 3397.425 kb on + strand at 3397.425 kb on + strand at 3397.426 kb on - strand at 3397.502 kb on - strand, within PS417_15510 at 3397.656 kb on + strand, within PS417_15510 at 3397.751 kb on + strand at 3397.752 kb on - strand at 3397.752 kb on - strand at 3397.810 kb on + strand at 3398.227 kb on - strand at 3398.416 kb on + strand, within PS417_15520 at 3398.416 kb on + strand, within PS417_15520 at 3398.690 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol% remove 3,396,569 + PS417_15505 0.11 +0.2 3,396,569 + PS417_15505 0.11 +0.4 3,396,662 - PS417_15505 0.22 +0.3 3,396,818 - PS417_15505 0.39 -0.0 3,396,818 - PS417_15505 0.39 +0.3 3,397,303 + -0.1 3,397,303 + -0.7 3,397,425 + +0.2 3,397,425 + -3.3 3,397,426 - +0.1 3,397,502 - PS417_15510 0.21 +0.9 3,397,656 + PS417_15510 0.66 -1.9 3,397,751 + -0.3 3,397,752 - +0.7 3,397,752 - +0.2 3,397,810 + -0.0 3,398,227 - +0.2 3,398,416 + PS417_15520 0.44 -0.1 3,398,416 + PS417_15520 0.44 -2.1 3,398,690 + -0.1
Or see this region's nucleotide sequence