Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15460 and PS417_15465 are separated by 277 nucleotides PS417_15465 and PS417_15470 are separated by 28 nucleotides
PS417_15460: PS417_15460 - GntR family transcriptional regulator, at 3,387,136 to 3,388,155
_15460
PS417_15465: PS417_15465 - carboxynorspermidine decarboxylase, at 3,388,433 to 3,389,530
_15465
PS417_15470: PS417_15470 - saccharopine dehydrogenase, at 3,389,559 to 3,390,803
_15470
Position (kb)
3388
3389
3390 Strain fitness (log2 ratio)
-2
-1
0
1 at 3387.612 kb on + strand, within PS417_15460 at 3387.613 kb on - strand, within PS417_15460 at 3387.695 kb on + strand, within PS417_15460 at 3387.696 kb on - strand, within PS417_15460 at 3387.696 kb on - strand, within PS417_15460 at 3387.696 kb on - strand, within PS417_15460 at 3388.095 kb on + strand at 3388.135 kb on + strand at 3388.136 kb on - strand at 3388.136 kb on - strand at 3388.205 kb on + strand at 3388.250 kb on + strand at 3388.301 kb on + strand at 3388.311 kb on + strand at 3388.311 kb on + strand at 3388.311 kb on + strand at 3388.358 kb on + strand at 3388.451 kb on + strand at 3388.499 kb on + strand at 3388.500 kb on - strand at 3388.500 kb on - strand at 3388.500 kb on - strand at 3388.584 kb on - strand, within PS417_15465 at 3388.662 kb on - strand, within PS417_15465 at 3388.662 kb on - strand, within PS417_15465 at 3389.099 kb on + strand, within PS417_15465 at 3389.295 kb on - strand, within PS417_15465 at 3389.295 kb on - strand at 3389.295 kb on - strand, within PS417_15465 at 3389.295 kb on - strand, within PS417_15465 at 3389.295 kb on - strand, within PS417_15465 at 3389.295 kb on - strand at 3389.510 kb on + strand at 3389.648 kb on + strand at 3389.648 kb on + strand at 3389.655 kb on - strand at 3389.880 kb on + strand, within PS417_15470 at 3389.881 kb on - strand, within PS417_15470 at 3390.352 kb on - strand, within PS417_15470 at 3390.352 kb on - strand, within PS417_15470
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol% remove 3,387,612 + PS417_15460 0.47 +0.4 3,387,613 - PS417_15460 0.47 -0.4 3,387,695 + PS417_15460 0.55 -0.1 3,387,696 - PS417_15460 0.55 -0.0 3,387,696 - PS417_15460 0.55 +0.3 3,387,696 - PS417_15460 0.55 -0.1 3,388,095 + -0.3 3,388,135 + -0.5 3,388,136 - +0.1 3,388,136 - +0.2 3,388,205 + -0.2 3,388,250 + -0.1 3,388,301 + +0.2 3,388,311 + -0.8 3,388,311 + +0.1 3,388,311 + -0.6 3,388,358 + +0.9 3,388,451 + -0.6 3,388,499 + +1.0 3,388,500 - -0.7 3,388,500 - +1.0 3,388,500 - +1.0 3,388,584 - PS417_15465 0.14 -1.8 3,388,662 - PS417_15465 0.21 +0.4 3,388,662 - PS417_15465 0.21 -1.1 3,389,099 + PS417_15465 0.61 -1.4 3,389,295 - PS417_15465 0.79 -0.6 3,389,295 - +0.2 3,389,295 - PS417_15465 0.79 -1.1 3,389,295 - PS417_15465 0.79 -0.8 3,389,295 - PS417_15465 0.79 +0.3 3,389,295 - +0.2 3,389,510 + -0.9 3,389,648 + +0.0 3,389,648 + +0.4 3,389,655 - -0.3 3,389,880 + PS417_15470 0.26 +0.0 3,389,881 - PS417_15470 0.26 -0.5 3,390,352 - PS417_15470 0.64 -1.0 3,390,352 - PS417_15470 0.64 -0.0
Or see this region's nucleotide sequence