Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13880 and PS417_13885 are separated by 206 nucleotides PS417_13885 and PS417_13890 are separated by 78 nucleotides
PS417_13880: PS417_13880 - histidine kinase, at 3,049,418 to 3,051,088
_13880
PS417_13885: PS417_13885 - chemotaxis protein CheY, at 3,051,295 to 3,051,672
_13885
PS417_13890: PS417_13890 - histidine kinase, at 3,051,751 to 3,052,944
_13890
Position (kb)
3051
3052 Strain fitness (log2 ratio)
-2
-1
0
1 at 3050.412 kb on + strand, within PS417_13880 at 3050.412 kb on + strand, within PS417_13880 at 3050.412 kb on + strand at 3050.412 kb on + strand, within PS417_13880 at 3050.413 kb on - strand, within PS417_13880 at 3050.413 kb on - strand, within PS417_13880 at 3050.450 kb on + strand at 3050.451 kb on - strand, within PS417_13880 at 3050.530 kb on + strand, within PS417_13880 at 3050.531 kb on - strand, within PS417_13880 at 3050.577 kb on - strand, within PS417_13880 at 3050.958 kb on + strand at 3050.972 kb on + strand at 3051.040 kb on + strand at 3051.091 kb on - strand at 3051.154 kb on + strand at 3051.154 kb on + strand at 3051.165 kb on - strand at 3051.241 kb on - strand at 3051.241 kb on - strand at 3051.313 kb on + strand at 3051.313 kb on + strand at 3051.313 kb on + strand at 3051.314 kb on + strand at 3051.330 kb on + strand at 3051.599 kb on + strand, within PS417_13885 at 3051.599 kb on + strand, within PS417_13885 at 3051.619 kb on - strand, within PS417_13885 at 3051.619 kb on - strand, within PS417_13885 at 3051.619 kb on - strand, within PS417_13885 at 3051.683 kb on - strand at 3051.779 kb on - strand at 3052.402 kb on - strand, within PS417_13890
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol% remove 3,050,412 + PS417_13880 0.59 -0.4 3,050,412 + PS417_13880 0.59 +0.3 3,050,412 + -0.6 3,050,412 + PS417_13880 0.59 +0.1 3,050,413 - PS417_13880 0.60 -0.1 3,050,413 - PS417_13880 0.60 +0.2 3,050,450 + +0.1 3,050,451 - PS417_13880 0.62 -0.4 3,050,530 + PS417_13880 0.67 -1.3 3,050,531 - PS417_13880 0.67 -0.2 3,050,577 - PS417_13880 0.69 -0.9 3,050,958 + +0.7 3,050,972 + +0.8 3,051,040 + -1.2 3,051,091 - -0.3 3,051,154 + -1.2 3,051,154 + +0.1 3,051,165 - -1.9 3,051,241 - -0.3 3,051,241 - -0.2 3,051,313 + +0.1 3,051,313 + -1.0 3,051,313 + -0.2 3,051,314 + +0.1 3,051,330 + +0.7 3,051,599 + PS417_13885 0.80 -0.7 3,051,599 + PS417_13885 0.80 +0.9 3,051,619 - PS417_13885 0.86 -0.4 3,051,619 - PS417_13885 0.86 -1.1 3,051,619 - PS417_13885 0.86 -0.6 3,051,683 - -0.2 3,051,779 - +0.3 3,052,402 - PS417_13890 0.55 +0.9
Or see this region's nucleotide sequence