Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13195 and PS417_13200 are separated by 450 nucleotides PS417_13200 and PS417_13205 overlap by 4 nucleotides PS417_13205 and PS417_13210 overlap by 4 nucleotides
PS417_13195: PS417_13195 - RND transporter MFP subunit, at 2,885,304 to 2,886,545
_13195
PS417_13200: PS417_13200 - isochorismate synthase, at 2,886,996 to 2,888,363
_13200
PS417_13205: PS417_13205 - isochorismate-pyruvate lyase, at 2,888,360 to 2,888,668
_13205
PS417_13210: PS417_13210 - enantio-pyochelin biosynthetic protein PchC, at 2,888,665 to 2,889,423
_13210
Position (kb)
2886
2887
2888
2889 Strain fitness (log2 ratio)
-1
0
1
2 at 2886.354 kb on + strand, within PS417_13195 at 2886.565 kb on - strand at 2886.599 kb on + strand at 2886.599 kb on + strand at 2886.599 kb on + strand at 2886.599 kb on + strand at 2886.600 kb on - strand at 2886.600 kb on - strand at 2886.600 kb on - strand at 2886.626 kb on + strand at 2886.626 kb on + strand at 2886.627 kb on - strand at 2886.645 kb on + strand at 2886.671 kb on - strand at 2886.754 kb on - strand at 2886.754 kb on - strand at 2886.970 kb on + strand at 2886.970 kb on + strand at 2886.971 kb on - strand at 2887.063 kb on + strand at 2887.064 kb on - strand at 2887.877 kb on - strand, within PS417_13200 at 2888.412 kb on + strand, within PS417_13205 at 2888.569 kb on - strand, within PS417_13205 at 2888.569 kb on - strand, within PS417_13205
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol% remove 2,886,354 + PS417_13195 0.85 +1.2 2,886,565 - +0.2 2,886,599 + +1.8 2,886,599 + +1.4 2,886,599 + +1.1 2,886,599 + +0.6 2,886,600 - +1.2 2,886,600 - +1.1 2,886,600 - +1.0 2,886,626 + +0.9 2,886,626 + +2.0 2,886,627 - +0.1 2,886,645 + +0.1 2,886,671 - +0.7 2,886,754 - -0.4 2,886,754 - -1.1 2,886,970 + +0.3 2,886,970 + +0.3 2,886,971 - -0.2 2,887,063 + -0.2 2,887,064 - +0.4 2,887,877 - PS417_13200 0.64 -0.3 2,888,412 + PS417_13205 0.17 +0.9 2,888,569 - PS417_13205 0.68 +1.5 2,888,569 - PS417_13205 0.68 +0.1
Or see this region's nucleotide sequence