Strain Fitness in Pseudomonas simiae WCS417 around PS417_10320

Experiment: 2-Furfuraldehyde 0.03 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10315 and PS417_10320 are separated by 1 nucleotidesPS417_10320 and PS417_10325 are separated by 84 nucleotidesPS417_10325 and PS417_10330 overlap by 1 nucleotides PS417_10315: PS417_10315 - cytochrome C biogenesis protein, at 2,205,287 to 2,206,495 _10315 PS417_10320: PS417_10320 - hypothetical protein, at 2,206,497 to 2,207,117 _10320 PS417_10325: PS417_10325 - chemotaxis protein CheY, at 2,207,202 to 2,207,573 _10325 PS417_10330: PS417_10330 - histidine kinase, at 2,207,573 to 2,209,135 _10330 Position (kb) 2206 2207 2208Strain fitness (log2 ratio) -2 -1 0 1at 2205.924 kb on + strand, within PS417_10315at 2206.001 kb on + strand, within PS417_10315at 2206.002 kb on - strand, within PS417_10315at 2206.151 kb on + strand, within PS417_10315at 2206.151 kb on + strand, within PS417_10315at 2206.151 kb on + strand, within PS417_10315at 2206.152 kb on - strand, within PS417_10315at 2206.152 kb on - strand, within PS417_10315at 2206.185 kb on - strand, within PS417_10315at 2206.209 kb on - strand, within PS417_10315at 2206.337 kb on + strand, within PS417_10315at 2206.338 kb on - strand, within PS417_10315at 2206.640 kb on + strandat 2206.640 kb on + strand, within PS417_10320at 2206.743 kb on - strand, within PS417_10320at 2207.094 kb on + strandat 2207.095 kb on - strandat 2207.169 kb on - strandat 2207.182 kb on + strandat 2207.182 kb on + strandat 2207.183 kb on - strandat 2207.183 kb on - strandat 2207.745 kb on + strand, within PS417_10330at 2207.745 kb on + strand, within PS417_10330at 2207.815 kb on - strand, within PS417_10330at 2207.878 kb on + strand, within PS417_10330at 2207.988 kb on - strand, within PS417_10330

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol%
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2,205,924 + PS417_10315 0.53 +0.2
2,206,001 + PS417_10315 0.59 -0.3
2,206,002 - PS417_10315 0.59 +0.3
2,206,151 + PS417_10315 0.71 -0.1
2,206,151 + PS417_10315 0.71 +0.4
2,206,151 + PS417_10315 0.71 -1.1
2,206,152 - PS417_10315 0.72 +0.8
2,206,152 - PS417_10315 0.72 -0.2
2,206,185 - PS417_10315 0.74 -1.0
2,206,209 - PS417_10315 0.76 +0.0
2,206,337 + PS417_10315 0.87 -0.1
2,206,338 - PS417_10315 0.87 -2.2
2,206,640 + -1.2
2,206,640 + PS417_10320 0.23 -0.8
2,206,743 - PS417_10320 0.40 -0.3
2,207,094 + -2.0
2,207,095 - +0.1
2,207,169 - +0.6
2,207,182 + +0.8
2,207,182 + -0.6
2,207,183 - -0.6
2,207,183 - -0.1
2,207,745 + PS417_10330 0.11 -0.4
2,207,745 + PS417_10330 0.11 -0.2
2,207,815 - PS417_10330 0.15 +0.8
2,207,878 + PS417_10330 0.20 -0.4
2,207,988 - PS417_10330 0.27 +1.2

Or see this region's nucleotide sequence