Strain Fitness in Pseudomonas simiae WCS417 around PS417_09695
Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.03 vol% |
---|---|---|---|---|---|
remove | |||||
2,101,308 | - | +0.0 | |||
2,101,544 | + | PS417_09690 | 0.38 | -0.3 | |
2,101,926 | - | PS417_09690 | 0.86 | +0.1 | |
2,101,926 | - | PS417_09690 | 0.86 | -0.0 | |
2,101,926 | - | PS417_09690 | 0.86 | -0.7 | |
2,102,012 | - | -0.4 | |||
2,102,280 | - | +0.9 | |||
2,102,347 | - | +0.1 | |||
2,102,360 | - | +0.3 | |||
2,102,564 | - | PS417_09695 | 0.38 | -0.6 | |
2,102,564 | - | PS417_09695 | 0.38 | -1.1 | |
2,102,715 | + | PS417_09695 | 0.59 | -2.9 | |
2,102,994 | + | -0.2 | |||
2,103,016 | + | -0.1 | |||
2,103,017 | - | +0.2 | |||
2,103,172 | - | -1.0 | |||
2,103,172 | - | -0.3 | |||
2,103,174 | - | -0.0 | |||
2,103,175 | + | +0.3 | |||
2,103,175 | + | +0.2 | |||
2,103,175 | + | +0.0 | |||
2,103,176 | - | +0.0 | |||
2,103,176 | - | -0.1 | |||
2,103,276 | + | +0.0 | |||
2,103,276 | + | -0.3 | |||
2,103,276 | + | +0.4 | |||
2,103,277 | - | -0.1 | |||
2,103,277 | - | -0.0 | |||
2,103,337 | - | -0.3 | |||
2,103,337 | - | -0.0 | |||
2,103,446 | + | +0.5 | |||
2,103,681 | + | PS417_09700 | 0.28 | -0.1 | |
2,103,799 | - | -1.6 | |||
2,103,799 | - | PS417_09700 | 0.43 | -0.5 | |
2,103,862 | + | PS417_09700 | 0.50 | +1.1 | |
2,103,863 | - | PS417_09700 | 0.50 | +0.4 | |
2,103,863 | - | PS417_09700 | 0.50 | +0.1 | |
2,104,001 | - | PS417_09700 | 0.68 | -0.4 |
Or see this region's nucleotide sequence