Experiment: 2-Furfuraldehyde 0.03 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06665 and PS417_06675 are separated by 436 nucleotides PS417_06675 and PS417_06680 are separated by 168 nucleotides
PS417_06665: PS417_06665 - LysR family transcriptional regulator, at 1,477,868 to 1,478,734
_06665
PS417_06675: PS417_06675 - ATP-dependent helicase, at 1,479,171 to 1,479,287
_06675
PS417_06680: PS417_06680 - nuclease PIN, at 1,479,456 to 1,480,931
_06680
Position (kb)
1479
1480 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1478.183 kb on + strand, within PS417_06665 at 1478.184 kb on - strand, within PS417_06665 at 1478.186 kb on + strand, within PS417_06665 at 1478.186 kb on + strand, within PS417_06665 at 1478.215 kb on + strand, within PS417_06665 at 1478.215 kb on + strand, within PS417_06665 at 1478.215 kb on + strand, within PS417_06665 at 1478.338 kb on + strand, within PS417_06665 at 1478.338 kb on + strand, within PS417_06665 at 1478.339 kb on - strand, within PS417_06665 at 1478.379 kb on - strand, within PS417_06665 at 1478.520 kb on + strand, within PS417_06665 at 1478.520 kb on + strand, within PS417_06665 at 1478.520 kb on + strand, within PS417_06665 at 1478.520 kb on + strand, within PS417_06665 at 1478.521 kb on - strand, within PS417_06665 at 1478.521 kb on - strand, within PS417_06665 at 1478.521 kb on - strand, within PS417_06665 at 1478.524 kb on - strand, within PS417_06665 at 1478.524 kb on - strand, within PS417_06665 at 1478.832 kb on - strand at 1478.855 kb on + strand at 1478.855 kb on + strand at 1478.856 kb on - strand at 1479.058 kb on + strand at 1479.133 kb on + strand at 1479.211 kb on + strand, within PS417_06675 at 1479.212 kb on - strand, within PS417_06675 at 1479.212 kb on - strand, within PS417_06675 at 1479.236 kb on - strand, within PS417_06675 at 1479.251 kb on + strand, within PS417_06675 at 1479.275 kb on + strand, within PS417_06675 at 1479.285 kb on + strand at 1479.285 kb on + strand at 1479.300 kb on + strand at 1479.300 kb on + strand at 1479.300 kb on + strand at 1479.300 kb on + strand at 1479.374 kb on + strand at 1479.375 kb on - strand at 1479.388 kb on + strand at 1479.388 kb on + strand at 1479.388 kb on + strand at 1479.389 kb on - strand at 1479.389 kb on - strand at 1479.396 kb on + strand at 1479.396 kb on + strand at 1479.396 kb on + strand at 1479.396 kb on + strand at 1479.396 kb on + strand at 1479.397 kb on - strand at 1479.404 kb on + strand at 1479.579 kb on - strand at 1479.703 kb on + strand, within PS417_06680 at 1479.703 kb on + strand, within PS417_06680 at 1479.703 kb on + strand, within PS417_06680 at 1479.703 kb on + strand, within PS417_06680 at 1479.704 kb on - strand, within PS417_06680 at 1479.704 kb on - strand, within PS417_06680 at 1479.704 kb on - strand, within PS417_06680 at 1479.704 kb on - strand, within PS417_06680 at 1479.744 kb on + strand, within PS417_06680 at 1479.934 kb on + strand, within PS417_06680 at 1479.950 kb on + strand, within PS417_06680 at 1479.951 kb on - strand, within PS417_06680 at 1479.976 kb on + strand, within PS417_06680 at 1480.157 kb on + strand, within PS417_06680 at 1480.171 kb on + strand, within PS417_06680 at 1480.171 kb on + strand, within PS417_06680 at 1480.172 kb on - strand, within PS417_06680 at 1480.172 kb on - strand, within PS417_06680
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.03 vol% remove 1,478,183 + PS417_06665 0.36 +0.4 1,478,184 - PS417_06665 0.36 -0.3 1,478,186 + PS417_06665 0.37 -0.4 1,478,186 + PS417_06665 0.37 -0.9 1,478,215 + PS417_06665 0.40 +0.3 1,478,215 + PS417_06665 0.40 +0.3 1,478,215 + PS417_06665 0.40 +0.3 1,478,338 + PS417_06665 0.54 -0.1 1,478,338 + PS417_06665 0.54 +0.2 1,478,339 - PS417_06665 0.54 +1.2 1,478,379 - PS417_06665 0.59 -0.6 1,478,520 + PS417_06665 0.75 -0.5 1,478,520 + PS417_06665 0.75 +1.0 1,478,520 + PS417_06665 0.75 +0.0 1,478,520 + PS417_06665 0.75 +0.1 1,478,521 - PS417_06665 0.75 +0.1 1,478,521 - PS417_06665 0.75 +0.2 1,478,521 - PS417_06665 0.75 -0.0 1,478,524 - PS417_06665 0.76 +0.4 1,478,524 - PS417_06665 0.76 -1.1 1,478,832 - -0.1 1,478,855 + -0.1 1,478,855 + -1.2 1,478,856 - -0.3 1,479,058 + -0.1 1,479,133 + -0.6 1,479,211 + PS417_06675 0.34 +0.9 1,479,212 - PS417_06675 0.35 -1.7 1,479,212 - PS417_06675 0.35 +0.1 1,479,236 - PS417_06675 0.56 +0.1 1,479,251 + PS417_06675 0.68 -1.0 1,479,275 + PS417_06675 0.89 -1.0 1,479,285 + +0.4 1,479,285 + -0.4 1,479,300 + -0.4 1,479,300 + -0.3 1,479,300 + -0.3 1,479,300 + +1.3 1,479,374 + +1.3 1,479,375 - +1.3 1,479,388 + -0.1 1,479,388 + +0.2 1,479,388 + -0.5 1,479,389 - +1.0 1,479,389 - -1.3 1,479,396 + +0.2 1,479,396 + -1.4 1,479,396 + -0.0 1,479,396 + -2.8 1,479,396 + -0.2 1,479,397 - -0.3 1,479,404 + +0.0 1,479,579 - -1.9 1,479,703 + PS417_06680 0.17 -1.5 1,479,703 + PS417_06680 0.17 -1.1 1,479,703 + PS417_06680 0.17 -1.8 1,479,703 + PS417_06680 0.17 -1.2 1,479,704 - PS417_06680 0.17 -1.4 1,479,704 - PS417_06680 0.17 -1.3 1,479,704 - PS417_06680 0.17 -2.9 1,479,704 - PS417_06680 0.17 -3.1 1,479,744 + PS417_06680 0.20 -1.1 1,479,934 + PS417_06680 0.32 -0.9 1,479,950 + PS417_06680 0.33 -2.6 1,479,951 - PS417_06680 0.34 -3.0 1,479,976 + PS417_06680 0.35 +0.7 1,480,157 + PS417_06680 0.47 -1.8 1,480,171 + PS417_06680 0.48 -1.9 1,480,171 + PS417_06680 0.48 -0.2 1,480,172 - PS417_06680 0.49 -1.3 1,480,172 - PS417_06680 0.49 -1.1
Or see this region's nucleotide sequence