Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4626 and Echvi_4627 are separated by 270 nucleotides Echvi_4627 and Echvi_4628 are separated by 122 nucleotides Echvi_4628 and Echvi_4629 are separated by 132 nucleotides Echvi_4629 and Echvi_4630 are separated by 119 nucleotides
Echvi_4626: Echvi_4626 - 16S, at 5,535,768 to 5,537,179
_4626
Echvi_4627: Echvi_4627 - hypothetical protein, at 5,537,450 to 5,537,710
_4627
Echvi_4628: Echvi_4628 - adenylosuccinate synthase, at 5,537,833 to 5,539,098
_4628
Echvi_4629: Echvi_4629 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 5,539,231 to 5,539,575
_4629
Echvi_4630: Echvi_4630 - Fe2+/Zn2+ uptake regulation proteins, at 5,539,695 to 5,540,162
_4630
Position (kb) 5537
5538
5539
5540 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5537.664 kb on - strand, within Echvi_4627 at 5537.685 kb on - strand at 5537.689 kb on + strand at 5537.693 kb on - strand at 5537.824 kb on - strand at 5537.824 kb on - strand at 5539.108 kb on - strand at 5539.113 kb on - strand at 5539.113 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.117 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.119 kb on - strand at 5539.203 kb on + strand at 5539.203 kb on + strand at 5539.203 kb on + strand at 5539.237 kb on + strand at 5539.296 kb on + strand, within Echvi_4629 at 5539.315 kb on + strand, within Echvi_4629 at 5539.315 kb on + strand, within Echvi_4629 at 5539.316 kb on - strand, within Echvi_4629 at 5539.341 kb on - strand, within Echvi_4629 at 5539.341 kb on - strand, within Echvi_4629 at 5539.354 kb on + strand, within Echvi_4629 at 5539.371 kb on + strand, within Echvi_4629 at 5539.411 kb on - strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.412 kb on + strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.413 kb on - strand, within Echvi_4629 at 5539.435 kb on - strand, within Echvi_4629 at 5539.437 kb on + strand, within Echvi_4629 at 5539.437 kb on + strand, within Echvi_4629 at 5539.438 kb on - strand, within Echvi_4629 at 5539.459 kb on + strand, within Echvi_4629 at 5539.563 kb on - strand at 5539.563 kb on - strand at 5539.563 kb on - strand at 5539.575 kb on + strand at 5539.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 5,537,664 - Echvi_4627 0.82 +2.2 5,537,685 - -2.4 5,537,689 + -1.1 5,537,693 - -0.1 5,537,824 - +3.2 5,537,824 - +2.0 5,539,108 - +0.6 5,539,113 - -2.5 5,539,113 - +0.8 5,539,117 - +1.3 5,539,117 - -0.3 5,539,117 - -0.5 5,539,117 - -0.3 5,539,117 - +0.7 5,539,117 - -1.3 5,539,117 - +0.4 5,539,117 - +0.4 5,539,117 - +1.7 5,539,117 - +1.4 5,539,117 - -2.2 5,539,117 - +0.8 5,539,119 - +0.7 5,539,119 - -0.5 5,539,119 - -1.0 5,539,119 - -2.2 5,539,119 - -0.8 5,539,203 + +1.8 5,539,203 + +1.2 5,539,203 + +1.4 5,539,237 + -0.1 5,539,296 + Echvi_4629 0.19 +0.9 5,539,315 + Echvi_4629 0.24 -1.9 5,539,315 + Echvi_4629 0.24 +0.3 5,539,316 - Echvi_4629 0.25 -0.5 5,539,341 - Echvi_4629 0.32 -1.2 5,539,341 - Echvi_4629 0.32 -0.6 5,539,354 + Echvi_4629 0.36 +1.4 5,539,371 + Echvi_4629 0.41 +0.8 5,539,411 - Echvi_4629 0.52 -0.8 5,539,412 + Echvi_4629 0.52 +1.0 5,539,412 + Echvi_4629 0.52 +1.4 5,539,412 + Echvi_4629 0.52 +0.2 5,539,413 - Echvi_4629 0.53 +0.3 5,539,413 - Echvi_4629 0.53 +1.4 5,539,413 - Echvi_4629 0.53 -2.5 5,539,413 - Echvi_4629 0.53 -0.3 5,539,435 - Echvi_4629 0.59 -1.1 5,539,437 + Echvi_4629 0.60 -0.8 5,539,437 + Echvi_4629 0.60 +2.1 5,539,438 - Echvi_4629 0.60 -0.3 5,539,459 + Echvi_4629 0.66 -0.1 5,539,563 - +0.3 5,539,563 - +0.6 5,539,563 - -0.3 5,539,575 + +1.6 5,539,575 + +1.2
Or see this region's nucleotide sequence